Nongluk (Noi) Plongthongkum: Difference between revisions

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*[[Noi:Targeted bisulfite sequencing|Targeted bisulfite sequencing]]
*[[Noi:Targeted bisulfite sequencing|Targeted bisulfite sequencing]]
** '''Schizophrenia''' (UCLA, Roel Ophoff):  
** '''Schizophrenia''' (UCLA, Roel Ophoff):  
*** Sample identity identification by Dinh:  
*** Sample identity check by Dinh (checked after combining three batches of sequencing data):  
**** Homozygous and heterozygous call for X chromosome: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Dinh_2011/NOTES/2011-11-28]]
**** Homozygous and heterozygous call for X chromosome: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Dinh_2011/NOTES/2011-11-28]]
**** Genetic distance: [[http://genome-tech.ucsd.edu/LabNotes/index.php/File:UCLA_GeneticDistance.pdf]]
**** Genetic distance: [[http://genome-tech.ucsd.edu/LabNotes/index.php/File:UCLA_GeneticDistance.pdf]]

Revision as of 17:05, 21 March 2012

Current Projects

  • Targeted bisulfite sequencing
    • Schizophrenia (UCLA, Roel Ophoff):
      • Sample identity check by Dinh (checked after combining three batches of sequencing data):
        • Homozygous and heterozygous call for X chromosome: [[1]]
        • Genetic distance: [[2]]
      • Mid-parent offspring (mpo) analysis
      • mQTL analysis
      • ASM analysis
    • Geographic Astrophy (GA) (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh
      • Regression analysis by Dr. Zhang: [[3]]
    • HAPMAP project (HAPMAP PT01, two families, 1362 and 1464)
  • Library construction (with Dinh)