Noi/NOTES/2012-4-21: Difference between revisions

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== To do list after discussing with Dr. Zhang (2012_04_20) ==
== To do list after discussing with Dr. Zhang (2012_04_20) ==
* First modify prob preparation protocol for LC sciences oligoes and write up the capture protocol.
* First modify prob preparation protocol for LC sciences oligoes and write up the capture protocol.
** [[http://genome-tech.ucsd.edu/public/Gen2_BSPP/Agilent_probe_preparation_Apr2012.pdf Agilent_probe_preparation]]
**[[http://genome-tech.ucsd.edu/public/Gen2_BSPP/LC_Sciences_probe_preparation_Apr2012.pdf LC_Sciences_probe_preparation]]
* Repeat mQTL analysis by filtering out SNP from methylation matrix. Then perform analysis as previously did. Continued on: http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-4-26
* Repeat mQTL analysis by filtering out SNP from methylation matrix. Then perform analysis as previously did. Continued on: http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-4-26
* Write up the summary of regression analysis in formal format and also use classification function in R or matlab to put the line to separate the two groups and see how they separated.  
* Write up the summary of regression analysis in formal format and also use classification function in R or matlab to put the line to separate the two groups and see how they separated.  
* Separate out CpG-SNP from all ASM analysis
* Separate out CpG-SNP from all ASM analysis

Revision as of 20:43, 26 April 2012

Link to calendar: [[1]]

Discussion with Dr. Zhang

To do list after discussing with Dr. Zhang (2012_04_20)