Noi/NOTES/2012-4-21: Difference between revisions
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== To do list after discussing with Dr. Zhang (2012_04_20) == | == To do list after discussing with Dr. Zhang (2012_04_20) == | ||
* First modify prob preparation protocol for LC sciences oligoes and write up the capture protocol. | * First modify prob preparation protocol for LC sciences oligoes and write up the capture protocol. | ||
** [[http://genome-tech.ucsd.edu/public/Gen2_BSPP/Agilent_probe_preparation_Apr2012.pdf Agilent_probe_preparation]] | **[[http://genome-tech.ucsd.edu/public/Gen2_BSPP/Agilent_probe_preparation_Apr2012.pdf Agilent_probe_preparation]] | ||
**[[http://genome-tech.ucsd.edu/public/Gen2_BSPP/LC_Sciences_probe_preparation_Apr2012.pdf LC_Sciences_probe_preparation]] | **[[http://genome-tech.ucsd.edu/public/Gen2_BSPP/LC_Sciences_probe_preparation_Apr2012.pdf LC_Sciences_probe_preparation]] | ||
* Repeat mQTL analysis by filtering out SNP from methylation matrix. Then perform analysis as previously did. Continued on: http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-4-26 | * Repeat mQTL analysis by filtering out SNP from methylation matrix. Then perform analysis as previously did. Continued on: http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-4-26 | ||
* Write up the summary of regression analysis in formal format and also use classification function in R or matlab to put the line to separate the two groups and see how they separated. | * Write up the summary of regression analysis in formal format and also use classification function in R or matlab to put the line to separate the two groups and see how they separated. | ||
* Separate out CpG-SNP from all ASM analysis | * Separate out CpG-SNP from all ASM analysis |
Latest revision as of 20:43, 26 April 2012
Link to calendar: [[1]]
Discussion with Dr. Zhang[edit]
To do list after discussing with Dr. Zhang (2012_04_20)[edit]
- First modify prob preparation protocol for LC sciences oligoes and write up the capture protocol.
- Repeat mQTL analysis by filtering out SNP from methylation matrix. Then perform analysis as previously did. Continued on: http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-4-26
- Write up the summary of regression analysis in formal format and also use classification function in R or matlab to put the line to separate the two groups and see how they separated.
- Separate out CpG-SNP from all ASM analysis