Noi/NOTES/2012-4-26: Difference between revisions

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* '''Link to calendar''': [[http://genome-tech.ucsd.edu/LabNotes/index.php/noi:DMR220k_LabNotes]]
* Previous analysis of mQTL on UCLA data set: http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-4-11
* Continued from: http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-4-21
== mQTL analysis on UCLA-SZ data set (no CpG-SNP) ==
== mQTL analysis on UCLA-SZ data set (no CpG-SNP) ==
* Details will be filled later
* Details will be filled later

Revision as of 20:50, 26 April 2012

mQTL analysis on UCLA-SZ data set (no CpG-SNP)

  • Details will be filled later
  • Note: P-value of 10%FDR is p <= 1.636Eāˆ’4
Associated CpG-SNP distance Number of assiciated CpG-SNP %
10%FDR_10kb 378 50.94%
10%FDR_10-20kb 27 3.64%
10%FDR_20-30kb 21 2.83%
10%FDR_30-40kb 36 4.85%
10%FDR_40-50kb 2 0.27%
10%FDR_50kb-2Mb 278 37.47%
Total in 2Mb 742


Associated CpG-SNP distance Number of assiciated CpG-SNP %
minpval0.05_10kb 862 13.43%
minpval0.05_10-20kb 124 1.93%
minpval0.05_20-30kb 133 2.07%
minpval0.05_30-40kb 108 1.68%
minpval0.05_40-50kb 75 1.17%
minpval0.05_50kb-2Mb 5,116 79.71%
Total in 2Mb 6,418