Blue:RNA-Seq Libraries: Difference between revisions
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|||[[Blue:RNA-Seq Experiments:09272013|09272013]]||id28||10pg UHRR||R06||RNaseIII (5min)||HL162||Lane 2||kunzhang/seqStore/131220_HL162/s_2_1_Indx28.txt|| | |||[[Blue:RNA-Seq Experiments:09272013|09272013]]||id28||10pg UHRR||R06||RNaseIII (5min)||HL162||Lane 2||kunzhang/seqStore/131220_HL162/s_2_1_Indx28.txt|| | ||
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|BL_huES8_SingleCell_N2id-90_Oct01||[[Blue:RNA-Seq Experiments:10012013|10012013]]||||250pg UHRR||R06||RNaseIII||HL161||Lane (id90)||/home/kunzhang/seqStore/131009_HL161|| | |BL_huES8_SingleCell_N2id-90_Oct01||[[Blue:RNA-Seq Experiments:10012013|10012013]]||||250pg UHRR||R06||RNaseIII||HL161||Lane (id90)||/home/kunzhang/seqStore/131009_HL161|| |
Revision as of 16:53, 6 January 2014
Sequencing Summary Table
Library | Experiment | ID | Sample | TSO | Condition | Seq Run | Lane | Data Storage Location | Analysis |
BL-mCherryNPC-N2id81_92-Apr24 | 04242013 | hNPC lo/hi Pool | R04 | RnaseIII | HL152 | Lanes 6-8 | /home/kunzhang/seqStore/130521_HL152 | ||
BL-UHRR-IVT-May28 | 05282013 | UHRR | RL.IVT.N6/N9 | RNaseIII | HL155 | Lanes 1,2 (id1,2,4,5) | /home/kunzhang/seqStore/130627_HiSeq_RapidRun/BL-UHRR-IVT-May28 | ||
BL_mESC_SingleCell_0614 | 06142013 | Single mESCs (60 cells) | R04 (one and two step) | RNaseIII, 94C 2min | HL155 | Lane 8 (id81-84) | /home/kunzhang/seqStore/130628_HL155 | ||
BL_mCherryNPC_0620 | 06202013 | human NPC sorts CD184+CD44- | R04 | RnaseIII | HL155 | Lanes1,2 (id1-5, 11-12) | /home/kunzhang/seqStore/130628_HL155 | ||
BL_mESC_SingleCell_0621 | 06212013 | mESCs (34 cells) | R04 (one step) | 94C 2min | HL155 | Lane 8 (id13-18) | /home/kunzhang/seqStore/130628_HL155 | ||
BL_mNPC_SingleCell_N2id81_Jul25 | 07252013 | Single mNPCs (60) | R04 | 94C 2min | HL157 | Lane 3 (id81) | /home/kunzhang/seqStore/130807_HL157 | ||
BL_mNPC_SingleCell_N2id82_Jul25 | 07252013 | Single mNPCs (60) | R04 | 94C 2min | HL157 | Lane 4 (id82) | /home/kunzhang/seqStore/130807_HL157 | ||
BL_huES8_SingleCell_N2id85_0820 | 08202013 | Single huESCs (30) | R04 | RNaseIII | HL161 | Lane (id85) | /home/kunzhang/seqStore/131009_HL161 | ||
BL_huES8_SingleCell_N2id86_0820 | 08202013 | Single huESCs (30) | R04 | RNaseIII | HL161 | Lane (id86) | /home/kunzhang/seqStore/131009_HL161 | ||
BL_huES8_SingleCell_N2id87-88_0820 | 08202013 | 250pg UHRR | R04 | RNaseIII | HL161 | Lane (id87,88) | /home/kunzhang/seqStore/131009_HL161 | ||
BL_UHRR_N2id9-12_0910 | 09102013 | 500pg UHRR | R04-R05 | RNaseIII, 94C 2min | HL160 | Lane 3 - 20% (id9-12) | /home/kunzhang/seqStore/130925_HL160 | ||
BL_UHRR_N2id13-14_0910 | 09102013 | 500pg UHRR | Smarter | RNaseIII, 94C 2min | HL161 | Lane (id13, 14) | /home/kunzhang/seqStore/131009_HL161 | ||
BL_UHRR_N2id9,12_Sept18 | 09182013 | 1ng UHRR | STRT_V2_3,R03 | RNaseIII | HL161 | Lane (id9, 12) | /home/kunzhang/seqStore/131009_HL161 | ||
BL_UHRR/HuNu_N2id15-20_Sept27 | 09272013 | 1ng UHRR, HuNu, msLCM | R06 | RNAseIII (5-10min) | HL161 | Lane 5(id15-20) | /home/kunzhang/seqStore/131009_HL161 | ||
BL_UHRR/HuNu_N2id21-28_Sept27 | 09272013 | id21 | 100pg UHRR | R06 | RNaseIII (10min) | HL162 | Lane 2 | kunzhang/seqStore/131220_HL162/s_2_1_Indx21.txt | |
09272013 | id22 | 100pg UHRR | R06 | RNaseIII (10min) | HL162 | Lane 2 | kunzhang/seqStore/131220_HL162/s_2_1_Indx22.txt | ||
09272013 | id23 | 100pg UHRR | R06 | RNaseIII (5min) | HL162 | Lane 2 | kunzhang/seqStore/131220_HL162/s_2_1_Indx23.txt | ||
09272013 | id24 | 100pg UHRR | R06 | RNaseIII (5min) | HL162 | Lane 2 | kunzhang/seqStore/131220_HL162/s_2_1_Indx24.txt | ||
09272013 | id25 | 10pg UHRR | R06 | RNaseIII (10min) | HL162 | Lane 2 | kunzhang/seqStore/131220_HL162/s_2_1_Indx25.txt | ||
09272013 | id26 | 10pg UHRR | R06 | RNaseIII (10min) | HL162 | Lane 2 | kunzhang/seqStore/131220_HL162/s_2_1_Indx26.txt | ||
09272013 | id27 | 10pg UHRR | R06 | RNaseIII (5min) | HL162 | Lane 2 | kunzhang/seqStore/131220_HL162/s_2_1_Indx27.txt | ||
09272013 | id28 | 10pg UHRR | R06 | RNaseIII (5min) | HL162 | Lane 2 | kunzhang/seqStore/131220_HL162/s_2_1_Indx28.txt | ||
BL_huES8_SingleCell_N2id-90_Oct01 | 10012013 | 250pg UHRR | R06 | RNaseIII | HL161 | Lane (id90) | /home/kunzhang/seqStore/131009_HL161 | ||
BL_huES8_SingleCell_N2id-89_Oct01 | 10012013 | Single huESCs (30) | R06 | RNaseIII | HL161 | Lane (id89) | /home/kunzhang/seqStore/131009_HL161 | ||
BL-LCM-10Cell_N2id1_4,7,8-Oct3 | 10032013 | id1 | msLCM 10 cell (C1) | R06 | RNaseIII | HL161 | Lane (id1-4, 7, 8) | /home/kunzhang/seqStore/131009_HL161 | |
id2 | msLCM 10 cell (C3) | R06 | RNaseIII | HL161 | Lane (id1-4, 7, 8) | /home/kunzhang/seqStore/131009_HL161 | |||
id3 | msLCM 10 cell(T1) | R06 | RNaseIII | HL161 | Lane (id1-4, 7, 8) | /home/kunzhang/seqStore/131009_HL161 | |||
id4 | msLCM 10 cell (T4) | R06 | RNaseIII | HL161 | Lane (id1-4, 7, 8) | /home/kunzhang/seqStore/131009_HL161 | |||
id7 | msLCM 100pg | R06 | RNaseIII | HL161 | Lane (id1-4, 7, 8) | /home/kunzhang/seqStore/131009_HL161 | |||
id8 | msLCM 100pg | R06 | RNaseIII | HL161 | Lane (id1-4, 7, 8) | /home/kunzhang/seqStore/131009_HL161 | |||
BL_totoRNAseq_10ngUHRR_Nov13 | 11132013 | id1 | UHRR(10ng)/ERCC RNaseIII buffer/Ambion PAP(ATP) | R06 | RNaseIII | HL162 | Lane 3 | kunzhang/seqStore/131220_HL162/s_3_1_Indx01.txt | |
11132013 | id2 | UHRR(10ng)/ERCC RNaseIII buffer/Ambion PAP(ATP/3'dATP) | R06 | RNaseIII | HL162 | Lane 3 | kunzhang/seqStore/131220_HL162/s_3_1_Indx02.txt | ||
11132013 | id3 | UHRR(10ng)/ERCC RNaseIII buffer/Ambion PAP(ATP/dATP) | R06 | RNaseIII | HL162 | Lane 3 | kunzhang/seqStore/131220_HL162/s_3_1_Indx03.txt | ||
11132013 | id4 | UHRR(10ng)/ERCC RNaseIII buffer/Affymetrix PAP(ATP) | R06 | RNaseIII | HL162 | Lane 3 | kunzhang/seqStore/131220_HL162/s_3_1_Indx04.txt | ||
11132013 | id5 | UHRR(10ng)/ERCC RNaseIII buffer/Affymetrix PAP(ATP/3'dATP) | R06 | RNaseIII | HL162 | Lane 3 | kunzhang/seqStore/131220_HL162/s_3_1_Indx05.txt | ||
11132013 | id6 | UHRR(10ng)/ERCC RNaseIII buffer/Affymetrix PAP(ATP/dATP) | R06 | RNaseIII | HL162 | Lane 3 | kunzhang/seqStore/131220_HL162/s_3_1_Indx06.txt | ||
11132013 | id7 | UHRR(10ng)/ERCC RNaseIII buffer/Affymetrix PAP(ATP) then added 3'dATP | R06 | RNaseIII | HL162 | Lane 3 | kunzhang/seqStore/131220_HL162/s_3_1_Indx07.txt | ||
BL_totoRNAseq_1ngUHRR_Dec03 | 12032013 | id81 | UHRR(1ng)/ERCC RNaseIII 5min/Affymetrix PAP 10min | R06 | RNaseIII | HL162 | Lane 8 | kunzhang/seqStore/131220_HL162/s_8_1_Indx81.txt | |
12032013 | id82 | UHRR(1ng)/ERCC RNaseIII 5min/Affymetrix PAP 10min | R06 | RNaseIII | HL162 | Lane 8 | kunzhang/seqStore/131220_HL162/s_8_1_Indx82.txt | ||
BL_totoRNAseq_1ng_100pgUHRR_Dec06 | 12062013 | id9 | UHRR(1ng)/ERCC RNaseIII 1min/Affymetrix PAP 10min | R06 | RNaseIII | HL162 | Lane 3 | kunzhang/seqStore/131220_HL162/s_3_1_Indx09.txt | |
12062013 | id10 | UHRR(1ng)/ERCC RNaseIII 1min/Affymetrix PAP 10min | R06 | RNaseIII | HL162 | Lane 3 | kunzhang/seqStore/131220_HL162/s_3_1_Indx10.txt | ||
12062013 | id17 | UHRR(1ng)/ERCC RNaseIII 1min/Affymetrix PAP 30min | R06 | RNaseIII | HL162 | Lane 3 | kunzhang/seqStore/131220_HL162/s_3_1_Indx17.txt | ||
12062013 | id18 | UHRR(1ng)/ERCC RNaseIII 1min/Affymetrix PAP 30min | R06 | RNaseIII | HL162 | Lane 3 | kunzhang/seqStore/131220_HL162/s_3_1_Indx18.txt | ||
12062013 | id11 | UHRR(100pg)/ERCC RNaseIII 1min/Affymetrix PAP 10min | R06 | RNaseIII | HL162 | Lane 3 | kunzhang/seqStore/131220_HL162/s_3_1_Indx11.txt | ||
12062013 | id12 | UHRR(100pg)/ERCC RNaseIII 1min/Affymetrix PAP 10min | R06 | RNaseIII | HL162 | Lane 3 | kunzhang/seqStore/131220_HL162/s_3_1_Indx12.txt | ||
12062013 | id19 | UHRR(100pg)/ERCC RNaseIII 1min/Affymetrix PAP 30min | R06 | RNaseIII | HL162 | Lane 3 | kunzhang/seqStore/131220_HL162/s_3_1_Indx19.txt | ||
12062013 | id20 | UHRR(100pg)/ERCC RNaseIII 1min/Affymetrix PAP 30min | R06 | RNaseIII | HL162 | Lane 3 | kunzhang/seqStore/131220_HL162/s_3_1_Indx20.txt | ||
BL_totoRNAseq_10pgUHRR_Dec10 | 12102013 | id89 | UHRR(10pg)/ERCC RNaseIII 15sec/Affymetrix PAP 10min | R06 | RNaseIII | HL162 | Lane 1 | kunzhang/seqStore/131220_HL162/s_1_1_Indx89.txt | |
12102013 | id90 | UHRR(10pg)/ERCC RNaseIII 15sec/Affymetrix PAP 10min | R06 | RNaseIII | HL162 | Lane 1 | kunzhang/seqStore/131220_HL162/s_1_1_Indx90.txt | ||
12102013 | id91 | UHRR(10pg)/ERCC RNaseIII 30sec/Affymetrix PAP 10min | R06 | RNaseIII | HL162 | Lane 1 | kunzhang/seqStore/131220_HL162/s_1_1_Indx91.txt | ||
12102013 | id92 | UHRR(10pg)/ERCC RNaseIII 30sec/Affymetrix PAP 10min | R06 | RNaseIII | HL162 | Lane 1 | kunzhang/seqStore/131220_HL162/s_1_1_Indx92.txt | ||
12102013 | id93 | UHRR(10pg)/ERCC RNaseIII 1min/Affymetrix PAP 10min | R06 | RNaseIII | HL162 | Lane 1 | kunzhang/seqStore/131220_HL162/s_1_1_Indx93.txt | ||
12102013 | id94 | UHRR(10pg)/ERCC RNaseIII 1min/Affymetrix PAP 10min | R06 | RNaseIII | HL162 | Lane 1 | kunzhang/seqStore/131220_HL162/s_1_1_Indx94.txt | ||
12102013 | id95 | UHRR(10pg)/ERCC RNaseIII 5min/Affymetrix PAP 10min | R06 | RNaseIII | HL162 | Lane 1 | kunzhang/seqStore/131220_HL162/s_1_1_Indx95.txt | ||
12102013 | id96 | UHRR(10pg)/ERCC RNaseIII 5min/Affymetrix PAP 10min | R06 | RNaseIII | HL162 | Lane 1 | kunzhang/seqStore/131220_HL162/s_1_1_Indx96.txt |
Additional Libraries Sequenced