Chris:LabNotes/Microbiome/2013/2013-5-14: Difference between revisions
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>Cjwei (Created page with "=Moleculo Data Analysis Part 1= ==Background== *We are integrating Illumina (short read) and Moleculo (long read) data to assemble the oncomelania genome *The overall plan tha...") |
>Cjwei |
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*We are integrating Illumina (short read) and Moleculo (long read) data to assemble the oncomelania genome | *We are integrating Illumina (short read) and Moleculo (long read) data to assemble the oncomelania genome | ||
*The overall plan that we are using is: | *The overall plan that we are using is: | ||
Test assembly of small Illumina dataset | Test assembly of small Illumina dataset | ||
| | | | ||
V | V | ||
Validation of assembly (using assembly statistics and core genes search) | Validation of assembly (using assembly statistics and core genes search) | ||
| | | | ||
V | V | ||
Assembly of whole Illumina dataset | Assembly of whole Illumina dataset | ||
| | | | ||
V | V | ||
Integration of Moleculo with Illumina reads | Integration of Moleculo with Illumina reads | ||
| | | | ||
V | V | ||
Validation of hybrid assembly (assembly statistics, core genes search, assembly errors) | Validation of hybrid assembly (assembly statistics, core genes search, assembly errors) | ||
*A more detailed plan can be found in: [[File:Moleculo_Data_Analysis_Plan_5_14_2013.docx]] | *A more detailed plan can be found in: [[File:Moleculo_Data_Analysis_Plan_5_14_2013.docx]] |
Revision as of 21:48, 14 May 2013
Moleculo Data Analysis Part 1
Background
- We are integrating Illumina (short read) and Moleculo (long read) data to assemble the oncomelania genome
- The overall plan that we are using is:
Test assembly of small Illumina dataset | V Validation of assembly (using assembly statistics and core genes search) | V Assembly of whole Illumina dataset | V Integration of Moleculo with Illumina reads | V
Validation of hybrid assembly (assembly statistics, core genes search, assembly errors)
- A more detailed plan can be found in: File:Moleculo Data Analysis Plan 5 14 2013.docx