Chris:LabNotes/Microbiome/2013/2013-5-14: Difference between revisions

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>Cjwei
(Created page with "=Moleculo Data Analysis Part 1= ==Background== *We are integrating Illumina (short read) and Moleculo (long read) data to assemble the oncomelania genome *The overall plan tha...")
 
>Cjwei
Line 3: Line 3:
*We are integrating Illumina (short read) and Moleculo (long read) data to assemble the oncomelania genome
*We are integrating Illumina (short read) and Moleculo (long read) data to assemble the oncomelania genome
*The overall plan that we are using is:
*The overall plan that we are using is:
Test assembly of small Illumina dataset
Test assembly of small Illumina dataset
           |
           |
           V
           V
Validation of assembly (using assembly statistics and core genes search)
Validation of assembly (using assembly statistics and core genes search)
           |
           |
           V
           V
Assembly of whole Illumina dataset
Assembly of whole Illumina dataset
           |
           |
           V
           V
Integration of Moleculo with Illumina reads
Integration of Moleculo with Illumina reads
           |
           |
           V
           V
Validation of hybrid assembly (assembly statistics, core genes search, assembly errors)
Validation of hybrid assembly (assembly statistics, core genes search, assembly errors)
*A more detailed plan can be found in: [[File:Moleculo_Data_Analysis_Plan_5_14_2013.docx]]
*A more detailed plan can be found in: [[File:Moleculo_Data_Analysis_Plan_5_14_2013.docx]]

Revision as of 21:48, 14 May 2013

Moleculo Data Analysis Part 1

Background

  • We are integrating Illumina (short read) and Moleculo (long read) data to assemble the oncomelania genome
  • The overall plan that we are using is:
Test assembly of small Illumina dataset
         |
         V
Validation of assembly (using assembly statistics and core genes search)
         |
         V
Assembly of whole Illumina dataset
         |
         V
Integration of Moleculo with Illumina reads
         |
         V

Validation of hybrid assembly (assembly statistics, core genes search, assembly errors)