Chris:LabNotes/Microbiome/2013/2013-5-14: Difference between revisions

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Validation of hybrid assembly (assembly statistics, core genes search, assembly errors)
Validation of hybrid assembly (assembly statistics, core genes search, assembly errors)
*A more detailed plan can be found in: [[File:Moleculo_Data_Analysis_Plan_5_14_2013.docx]]
*A more detailed plan can be found in: [[File:Moleculo_Data_Analysis_Plan_5_14_2013.docx]]
==Procedure==

Revision as of 21:49, 14 May 2013

Moleculo Data Analysis Part 1

Background

  • We are integrating Illumina (short read) and Moleculo (long read) data to assemble the oncomelania genome
  • The overall plan that we are using is:
Test assembly of small Illumina dataset
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Validation of assembly (using assembly statistics and core genes search)
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Assembly of whole Illumina dataset
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Integration of Moleculo with Illumina reads
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Validation of hybrid assembly (assembly statistics, core genes search, assembly errors)

Procedure