Daniel:Notebook/GenomeMiner/2013-7-18: Difference between revisions

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(Created page with "=HL155= Back to Calendar ==Bowtie Indexing= Using the fasta files I created Tuesday, I created an ...")
 
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'''Creating the Index File'''
'''Creating the Index File'''
   bowtie2-build -f Probelist_Set1.fa,Probelist_Set2.fa,Probelist_Set3.fa,Probelist_Set4.fa hcrp_probeseq
   bowtie2-build -f Probelist_Set1.fa,Probelist_Set2.fa,Probelist_Set3.fa,Probelist_Set4.fa hcrp_probeseq
''Test Bowtie2 Command Line'''
bowtie2 -x hcrp_probeseq -U s_2_1_Indx12.fq,s_2_1_Indx53.fq,s_2_1_Indx54.fq -S testSAMout &

Revision as of 21:07, 18 July 2013

HL155

Back to Calendar

=Bowtie Indexing

Using the fasta files I created Tuesday, I created an index file.

Creating the Index File

 bowtie2-build -f Probelist_Set1.fa,Probelist_Set2.fa,Probelist_Set3.fa,Probelist_Set4.fa hcrp_probeseq

Test Bowtie2 Command Line'

bowtie2 -x hcrp_probeseq -U s_2_1_Indx12.fq,s_2_1_Indx53.fq,s_2_1_Indx54.fq -S testSAMout &