Daniel:Notebook/GenomeMiner/2013-7-18: Difference between revisions
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>Djacobse (Created page with "=HL155= Back to Calendar ==Bowtie Indexing= Using the fasta files I created Tuesday, I created an ...") |
>Djacobse No edit summary |
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'''Creating the Index File''' | '''Creating the Index File''' | ||
bowtie2-build -f Probelist_Set1.fa,Probelist_Set2.fa,Probelist_Set3.fa,Probelist_Set4.fa hcrp_probeseq | bowtie2-build -f Probelist_Set1.fa,Probelist_Set2.fa,Probelist_Set3.fa,Probelist_Set4.fa hcrp_probeseq | ||
''Test Bowtie2 Command Line''' | |||
bowtie2 -x hcrp_probeseq -U s_2_1_Indx12.fq,s_2_1_Indx53.fq,s_2_1_Indx54.fq -S testSAMout & |
Revision as of 21:07, 18 July 2013
HL155
=Bowtie Indexing
Using the fasta files I created Tuesday, I created an index file.
Creating the Index File
bowtie2-build -f Probelist_Set1.fa,Probelist_Set2.fa,Probelist_Set3.fa,Probelist_Set4.fa hcrp_probeseq
Test Bowtie2 Command Line'
bowtie2 -x hcrp_probeseq -U s_2_1_Indx12.fq,s_2_1_Indx53.fq,s_2_1_Indx54.fq -S testSAMout &