Daniel:Notebook/GenomeMiner/2013-8-12: Difference between revisions

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>Djacobse
(Created page with "=HL155= Back to Calendar From the talk I had with Matt last week, I have changed my strategy. Now I'll be following [[Matt:LabNotes/2013-8-9...")
 
>Djacobse
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==My commands==
==My commands==


'''Sam > Bam and sort Bam'''
  samtools view -bS hrcp_fullindex_samout.sam | samtools sort - hrcp_sorted_hl155 &
  samtools view -bS hrcp_fullindex_samout.sam | samtools sort - hrcp_sorted_hl155 &

Revision as of 17:49, 12 August 2013

HL155

Back to Calendar

From the talk I had with Matt last week, I have changed my strategy. Now I'll be following his pipeline, since it seems to be more rigorous analysis than mine.

My commands

Sam > Bam and sort Bam

samtools view -bS hrcp_fullindex_samout.sam | samtools sort - hrcp_sorted_hl155 &