Daniel:Notebook/GenomeMiner/2013-8-13: Difference between revisions

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Continuing Matt's pipeline.  Looking over the perl script.
Continuing Matt's pipeline.  Looking over the perl script.
I believe I fixed the perl script:  [[File:]]
===Results===
'''Error Rate''': 0.0208727984165367
{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext>
|- style="font-size:12pt" align="center"
| align="center" width="65" height="30" | &nbsp;
|style="font-weight:bold" width="65" | Total reads
|style="font-weight:bold" width="65" | Filtered reads
|style="font-weight:bold" width="65" | Perfect match
|style="font-weight:bold" width="65" | 1 ins/del
|style="font-weight:bold" width="65" | 1 sub
|style="font-weight:bold" width="65" | 2 ins/del
|style="font-weight:bold" width="65" | 2 sub
|style="font-weight:bold" width="65" | 1 ins/del & 1 sub
|style="font-weight:bold" align="center" width="65" | 3+
|- style="font-size:12pt" align="center"
|style="font-weight:bold" height="15" | Number
| align="center" | 20727275
| align="center" | 15082383
| align="center" | 4411040
| align="center" | 3584377
| align="center" | 2417322
| align="center" | 1893421
| align="center" | 754110
| align="center" | 1647242
| align="center" | 374871
|- style="font-size:12pt" align="center"
|style="font-weight:bold" height="15" | Percent
| align="center" | 100
| align="center" | 72.77
| align="center" | 21.28
| align="center" | 17.29
| align="center" | 11.66
| align="center" | 9.13
| align="center" | 3.64
| align="center" | 7.95
| align="center" | 1.81
|}

Revision as of 17:59, 13 August 2013

HL155

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Continuing Matt's pipeline. Looking over the perl script.

I believe I fixed the perl script: [[File:]]

Results

Error Rate: 0.0208727984165367

  Total reads Filtered reads Perfect match 1 ins/del 1 sub 2 ins/del 2 sub 1 ins/del & 1 sub 3+
Number 20727275 15082383 4411040 3584377 2417322 1893421 754110 1647242 374871
Percent 100 72.77 21.28 17.29 11.66 9.13 3.64 7.95 1.81