Daniel:Notebook/GenomeMiner/2013-8-13: Difference between revisions

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Comparing this against [[Matt:LabNotes/2013-8-9#Count mismatches of Agi26k0gap|Matt's results]], it looks like the "error rate" reported initially looks much better for my probes.  However, by the numbers from the table, around 75% of Matt's reads were perfect, but mine tend to have at least 1 error.

Revision as of 18:07, 13 August 2013

HL155

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Continuing Matt's pipeline. Looking over the perl script.

I believe I fixed the perl script (uses my notation): File:Count mismatch.txt

Results

Error Rate: 0.0208727984165367

  Total reads Filtered reads Perfect match 1 ins/del 1 sub 2 ins/del 2 sub 1 ins/del & 1 sub 3+
Number 20727275 15082383 4411040 3584377 2417322 1893421 754110 1647242 374871
Percent 100 72.77 21.28 17.29 11.66 9.13 3.64 7.95 1.81

Comparing this against Matt's results, it looks like the "error rate" reported initially looks much better for my probes. However, by the numbers from the table, around 75% of Matt's reads were perfect, but mine tend to have at least 1 error.