Daniel:Notebook/GenomeMiner/2013-9-3: Difference between revisions
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[[Matt:LabNotes/2013-8-30|Matt discovered]] that the MYcroarray probe set may not be aligning well due because we should be aligning to the reverse complement of the probe sequences we've been using. As such, Matt did the analysis, and the results changed fairly dramatically. | [[Matt:LabNotes/2013-8-30|Matt discovered]] that the MYcroarray probe set may not be aligning well due because we should be aligning to the reverse complement of the probe sequences we've been using. As such, Matt did the analysis, and the results changed fairly dramatically. | ||
{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext> | |||
|- style="font-size:12pt" align="center" | |||
| align="center" width="106" height="15" | | |||
|style="font-weight:bold" width="65" | V4S1 | |||
|style="font-weight:bold" width="65" | V4S2 | |||
|style="font-weight:bold" width="65" | V4S3 | |||
|style="font-weight:bold" width="65" | V4S4 | |||
|style="font-weight:bold" width="65" | V6S1 | |||
|style="font-weight:bold" width="65" | V6S2 | |||
|style="font-weight:bold" width="65" | V6S3 | |||
|style="font-weight:bold" width="65" | V6S4 | |||
|style="font-weight:bold" width="125" | Weighted Average (%) | |||
|- style="font-size:12pt" align="center" | |||
|style="font-weight:bold" height="15" | Overall Error Rate | |||
| align="center" | 1.33% | |||
| align="center" | 1.32% | |||
| align="center" | 1.32% | |||
| align="center" | 1.19% | |||
| align="center" | 1.17% | |||
| align="center" | 1.13% | |||
| align="center" | 1.18% | |||
| align="center" | 1.15% | |||
| align="center" | 1.19 | |||
|- style="font-size:12pt" align="center" | |||
|style="font-weight:bold" height="15" | Insertions | |||
| align="center" | 0.26% | |||
| align="center" | 0.21% | |||
| align="center" | 0.24% | |||
| align="center" | 0.24% | |||
| align="center" | 0.19% | |||
| align="center" | 0.18% | |||
| align="center" | 0.19% | |||
| align="center" | 0.21% | |||
| align="center" | 0.20 | |||
|- style="font-size:12pt" align="center" | |||
|style="font-weight:bold" height="15" | Deletions | |||
| align="center" | 0.05% | |||
| align="center" | 0.04% | |||
| align="center" | 0.04% | |||
| align="center" | 0.05% | |||
| align="center" | 0.04% | |||
| align="center" | 0.04% | |||
| align="center" | 0.04% | |||
| align="center" | 0.05% | |||
| align="center" | 0.04 | |||
|- style="font-size:12pt" align="center" | |||
|style="font-weight:bold" height="15" | Substitutions | |||
| align="center" | 1.01% | |||
| align="center" | 1.07% | |||
| align="center" | 1.04% | |||
| align="center" | 0.90% | |||
| align="center" | 0.94% | |||
| align="center" | 0.91% | |||
| align="center" | 0.95% | |||
| align="center" | 0.89% | |||
| align="center" | 0.94 | |||
|- style="font-size:12pt" align="center" | |||
|style="font-weight:bold" height="15" | Number of Probes | |||
| align="center" | 2959 | |||
| align="center" | 3600 | |||
| align="center" | 5850 | |||
| align="center" | 5987 | |||
| align="center" | 16559 | |||
| align="center" | 16400 | |||
| align="center" | 13000 | |||
| align="center" | 13314 | |||
| align="center" | | |||
|} |
Revision as of 20:50, 3 September 2013
HL155
Matt discovered that the MYcroarray probe set may not be aligning well due because we should be aligning to the reverse complement of the probe sequences we've been using. As such, Matt did the analysis, and the results changed fairly dramatically.
V4S1 | V4S2 | V4S3 | V4S4 | V6S1 | V6S2 | V6S3 | V6S4 | Weighted Average (%) | |
Overall Error Rate | 1.33% | 1.32% | 1.32% | 1.19% | 1.17% | 1.13% | 1.18% | 1.15% | 1.19 |
Insertions | 0.26% | 0.21% | 0.24% | 0.24% | 0.19% | 0.18% | 0.19% | 0.21% | 0.20 |
Deletions | 0.05% | 0.04% | 0.04% | 0.05% | 0.04% | 0.04% | 0.04% | 0.05% | 0.04 |
Substitutions | 1.01% | 1.07% | 1.04% | 0.90% | 0.94% | 0.91% | 0.95% | 0.89% | 0.94 |
Number of Probes | 2959 | 3600 | 5850 | 5987 | 16559 | 16400 | 13000 | 13314 |