Daniel:Notebook/GenomeMiner/2013-9-20: Difference between revisions

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>Djacobse
>Djacobse
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  1. MockHL155_Master.m, Switch 5
  1. MockHL155_Master.m, Switch 5
  2. scp v4s1mockseq_errormimic_30to50bp.fq djacobse@132.239.135.41:/media/LTS_15T/DEJ_LTS/SeqStore/130628_HL155/mockseq/errormimic_30to50/
  2. scp v4s1mockseq_errormimic_30to50bp.fq djacobse@132.239.135.41:/media/LTS_15T/DEJ_LTS/SeqStore/130628_HL155/mockseq/errormimic_30to50/
3. ./hl155bash.sh
4. perl imp_count_mismatch.plx

Revision as of 19:30, 20 September 2013

Mock HL155 (Started 9/9/2013)

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Mimic Data, Bases 30 to 50

Last mimic data bases 30 to 50 actually put insertions/deletions from bases 1 to 29, not 30 to 50, so for good measure I'm repeating the code using the correct 30 to 50 range. This will make it directly comparable to the perfect base quality mimic data from 9/18.

Workflow

1. MockHL155_Master.m, Switch 5
2. scp v4s1mockseq_errormimic_30to50bp.fq djacobse@132.239.135.41:/media/LTS_15T/DEJ_LTS/SeqStore/130628_HL155/mockseq/errormimic_30to50/
3. ./hl155bash.sh
4. perl imp_count_mismatch.plx