Alice:Sequencing Sample Record: Difference between revisions

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>Zsakura2
>Zsakura2
 
Line 1: Line 1:
=SCNT-ESC vs iPSC mutation load=
=mouse SCNT-ESC vs iPSC mutation load (collaborate with Xu lab)=
{| {{table}}
{| {{table}} border=1 style="text-align: center;"
| align="center" style="background:#f0f0f0;"|'''internal sample ID'''
| align="center" style="background:#f0f0f0;"|'''internal sample ID'''
| align="center" style="background:#f0f0f0;"|'''official ID for publication'''
| align="center" style="background:#f0f0f0;"|'''official ID for publication'''

Latest revision as of 08:45, 29 January 2014

mouse SCNT-ESC vs iPSC mutation load (collaborate with Xu lab)[edit]

internal sample ID official ID for publication raw data location
1E12P20 1E12 /media/SeqStore2/110303_HL088/s_3_sequence.txt.gz
/media/SeqStore2/110303_HL088/s_4_sequence.txt.gz
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_1_Indx26.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_2_Indx26.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_1_Indx26.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_2_Indx26.txt
2eips2p5 2eiPS /media/SeqStore2/110303_HL088/s_1_sequence.txt.gz
/media/SeqStore2/110303_HL088/s_2_sequence.txt.gz
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_1_Indx27.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_2_Indx27.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_1_Indx27.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_2_Indx27.txt
TB MEF B6MEF5 /media/SeqStore2/110303_HL088/s_5_sequence.txt.gz
/media/SeqStore2/110303_HL088/s_6_sequence.txt.gz
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_1_Indx28.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_2_Indx28.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_1_Indx28.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_2_Indx28.txt
2A4F1 2A4F1 /media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_1_Indx09.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_2_Indx09.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_1_Indx09.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_2_Indx09.txt
/media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_1_Indx9.txt.gz
/media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_2_Indx9.txt.gz
2A4F33 2A4F33 /media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_1_Indx10.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_2_Indx10.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_1_Indx10.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_2_Indx10.txt
/media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_1_Indx10.txt.gz
/media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_2_Indx10.txt.gz
mipsD1 miPS1 /media/SeqStore2/120906_SN1001/Alice_Exome/s_1_1_Indx19.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_1_2_Indx19.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_2_1_Indx19.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_2_2_Indx19.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_3_1_Indx19.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_3_2_Indx19.txt.gz
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_1_Indx19.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_2_Indx19.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_1_Indx19.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_2_Indx19.txt
mipsB3 miPS2
/media/SeqStore2/120906_SN1001/Alice_Exome/s_1_1_Indx21.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_1_2_Indx21.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_2_1_Indx21.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_2_2_Indx21.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_3_1_Indx21.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_3_2_Indx21.txt.gz
mipsD3 miPS3 /media/SeqStore2/120906_SN1001/Alice_Exome/s_1_1_Indx17.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_1_2_Indx17.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_2_1_Indx17.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_2_2_Indx17.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_3_1_Indx17.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_3_2_Indx17.txt.gz
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_1_Indx17.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_2_Indx17.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_1_Indx17.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_2_Indx17.txt
mipsD8 miPS4 /media/SeqStore2/120906_SN1001/Alice_Exome/s_1_1_Indx20.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_1_2_Indx20.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_2_1_Indx20.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_2_2_Indx20.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_3_1_Indx20.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_3_2_Indx20.txt.gz
ZN B6MEF B6MEF1 /media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_1_Indx25.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_2_Indx25.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_1_Indx25.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_2_Indx25.txt
B6P1-1 B6MEF3 /media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_1_Indx8.txt.gz
/media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_2_Indx8.txt.gz
B6P1-2 B6MEF4 /media/SeqStore2/120906_SN1001/Alice_Exome/s_1_1_Indx18.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_1_2_Indx18.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_2_1_Indx18.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_2_2_Indx18.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_3_1_Indx18.txt.gz
/media/SeqStore2/120906_SN1001/Alice_Exome/s_3_2_Indx18.txt.gz
NB1 SCNT3 /media/SeqStore2/120209_HiSeq/AL_Mouse_SCNT/Mouse_SCNT_exome_Index23_1.fq.gz
/media/SeqStore2/120209_HiSeq/AL_Mouse_SCNT/Mouse_SCNT_exome_Index23_2.fq.gz
NB3 SCNT4 /media/SeqStore2/120209_HiSeq/AL_Mouse_SCNT/Mouse_SCNT_exome_Index24_1.fq.gz
/media/SeqStore2/120209_HiSeq/AL_Mouse_SCNT/Mouse_SCNT_exome_Index24_2.fq.gz
nt ES P7C SCNT2 /media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_001.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_002.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_003.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_004.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_005.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_006.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_007.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_008.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_009.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_010.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_011.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_012.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_013.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_014.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_015.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_016.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_017.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_018.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_019.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_020.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_021.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_022.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind8/Ind8_ACTTGA_L007_R1_023.fastq.gz
/media/SeqStore2/111206_HL110/s_2_1_Indx8.txt
/media/SeqStore2/111206_HL110/s_3_1_Indx8.txt
/media/SeqStore2/111206_HL110/s_4_1_Indx8.txt
/media/SeqStore2/120130_HL113_3/lane1_4/s_1_1_Indx8.txt.gz
/media/SeqStore2/120130_HL113_3/lane1_4/s_2_1_Indx8.txt.gz
/media/SeqStore2/120130_HL113_3/lane1_4/s_3_1_Indx8.txt.gz
/media/SeqStore2/120130_HL113_3/lane1_4/s_4_1_Indx8.txt.gz
/media/SeqStore2/120211_HL114/AL_Exome/s_1_1_Indx8.txt.gz
/media/SeqStore2/120211_HL114/AL_Exome/s_4_1_Indx8.txt.gz
nt ES P8B SCNT1 /media/SeqStore2/111206_HL110/s_2_1_Indx7.txt
/media/SeqStore2/111206_HL110/s_3_1_Indx7.txt
/media/SeqStore2/111206_HL110/s_4_1_Indx7.txt
/media/SeqStore2/120130_HL113_3/lane1_4/s_1_1_Indx7.txt.gz
/media/SeqStore2/120130_HL113_3/lane1_4/s_2_1_Indx7.txt.gz
/media/SeqStore2/120130_HL113_3/lane1_4/s_3_1_Indx7.txt.gz
/media/SeqStore2/120130_HL113_3/lane1_4/s_4_1_Indx7.txt.gz
/media/SeqStore2/120211_HL114/AL_Exome/s_1_1_Indx7.txt.gz
/media/SeqStore2/120211_HL114/AL_Exome/s_4_1_Indx7.txt.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_001.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_002.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_003.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_004.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_005.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_006.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_007.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_008.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_009.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_010.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_011.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_012.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_013.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_014.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_015.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_016.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_017.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_018.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind7/Ind7_CAGATC_L007_R1_019.fastq.gz
B6MEFP3 B6MEF2 /media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_001.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_002.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_003.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_004.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_005.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_006.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_007.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_008.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_009.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_010.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_011.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_012.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_013.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_014.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_015.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_016.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_017.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_018.fastq.gz
/media/SeqStore2/130118_SN1001/Sample_Ind6/Ind6_GCCAAT_L007_R1_019.fastq.gz
/media/SeqStore2/111206_HL110/s_2_1_Indx6.txt
/media/SeqStore2/111206_HL110/s_3_1_Indx6.txt
/media/SeqStore2/111206_HL110/s_4_1_Indx6.txt
/media/SeqStore2/120130_HL113_3/lane1_4/s_1_1_Indx6.txt.gz
/media/SeqStore2/120130_HL113_3/lane1_4/s_2_1_Indx6.txt.gz
/media/SeqStore2/120130_HL113_3/lane1_4/s_3_1_Indx6.txt.gz
/media/SeqStore2/120130_HL113_3/lane1_4/s_4_1_Indx6.txt.gz
/media/SeqStore2/120211_HL114/AL_Exome/s_1_1_Indx6.txt .gz
/media/SeqStore2/120211_HL114/AL_Exome/s_4_1_Indx6.txt.gz
B7 SCNT5 /media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_1_Indx1.txt.gz
/media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_2_Indx1.txt.gz
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_1_Indx01.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_2_Indx01.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_1_Indx01.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_2_Indx01.txt
B8 SCNT6 /media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_1_Indx2.txt.gz
/media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_2_Indx2.txt.gz
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_1_Indx02.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_2_Indx02.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_1_Indx02.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_2_Indx02.txt
B9 SCNT7 /media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_1_Indx3.txt.gz
/media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_2_Indx3.txt.gz
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_1_Indx03.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_2_Indx03.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_1_Indx03.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_2_Indx03.txt
B10 SCNT8 /media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_1_Indx4.txt.gz
/media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_2_Indx4.txt.gz
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_1_Indx04.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_2_Indx04.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_1_Indx04.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_2_Indx04.txt
B11 SCNT9 /media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_1_Indx5.txt.gz
/media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_2_Indx5.txt.gz
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_1_Indx05.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_2_Indx05.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_1_Indx05.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_2_Indx05.txt
B12 SCNT10 /media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_1_Indx6.txt.gz
/media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_2_Indx6.txt.gz
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_1_Indx06.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_2_Indx06.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_1_Indx06.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_2_Indx06.txt
B13 SCNT11 /media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_1_Indx7.txt.gz
/media/SeqStore2/120531_SN100_DD/AL_Mexome/s_3_2_Indx7.txt.gz
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_1_Indx07.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_1_2_Indx07.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_1_Indx07.txt
/media/SeqStore2/130913_SN1001/STD_demultiplexing/s_2_2_Indx07.txt