Noi/NOTES/2014-12-25: Difference between revisions

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>Noi
(Created page with "= Summary of WGBS sequencing libraries captured by SeqCap Hybridization capture and their corresponding index = '''Back to calendar''' == 1) Hi...")
 
>Noi
mNo edit summary
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* PE 100+7
* PE 100+7
{| {{table}} border = 1
{| {{table}} border = 1
| align="center" style="background:#f0f0f0;"|'''Library ID (for sequencing)'''
| align="center" style="width:220px;background:#f0f0f0;"|'''Library ID (for sequencing)'''
| align="center" style="background:#f0f0f0;"|'''Sample ID'''
| align="center" style="width:100px;background:#f0f0f0;"|'''Sample ID'''
| align="center" style="background:#f0f0f0;"|'''Adaptor System/primers'''
| align="center" style="width:100px;background:#f0f0f0;"|'''Adaptor System/primers'''
| align="center" style="background:#f0f0f0;"|'''Index #'''
| align="center" style="width:60px;background:#f0f0f0;"|'''Index #'''
| align="center" style="background:#f0f0f0;"|'''Seq (RC)'''
| align="center" style="width:80px;background:#f0f0f0;"|'''Seq (RC)'''
| align="center" style="background:#f0f0f0;"|'''Sequencing platform/at'''
| align="center" style="width:100px;background:#f0f0f0;"|'''Sequencing platform/at'''
| align="center" style="background:#f0f0f0;"|'''Lane #'''
| align="center" style="width:60px;background:#f0f0f0;"|'''Lane #'''
|-
|-
| NP-SeqCap-pCancerSetB-Dec4||PC-P_3||TruSeq||2||CGATGT||Rapid run/IGM||1
| NP-SeqCap-pCancerSetB-Dec4||PC-P_3||TruSeq||2||CGATGT||Rapid run/IGM||1
|-
|-
| NP-SeqCap-pCancerSetB-Dec5||PC-P_5||TruSeq||4||TGACCA||Rapid run/IGM||1
| NP-SeqCap-pCancerSetB-Dec4||PC-P_5||TruSeq||4||TGACCA||Rapid run/IGM||1
|-
|-
| NP-SeqCap-pCancerSetB-Dec6||PC-P_6||TruSeq||5||ACAGTG||Rapid run/IGM||1
| NP-SeqCap-pCancerSetB-Dec4||PC-P_6||TruSeq||5||ACAGTG||Rapid run/IGM||1
|-
|-
| NP-SeqCap-pCancerSetB-Dec7||PC-P_7||TruSeq||6||GCCAAT||Rapid run/IGM||1
| NP-SeqCap-pCancerSetB-Dec4||PC-P_7||TruSeq||6||GCCAAT||Rapid run/IGM||1
|-
|-
| NP-SeqCap-pCancerSetB-Dec8||PC-P_8||TruSeq||7||CAGATC||Rapid run/IGM||1
| NP-SeqCap-pCancerSetB-Dec4||PC-P_8||TruSeq||7||CAGATC||Rapid run/IGM||1
|-
|-
| NP-SeqCap-pCancerSetB-Dec9||6-P-4||TruSeq||12||CTTGTA||Rapid run/IGM||1
| NP-SeqCap-pCancerSetB-Dec4||6-P-4||TruSeq||12||CTTGTA||Rapid run/IGM||1
|-
|-
| NP-SeqCap-pCancerSetB-Dec10||6-P-5||TruSeq||13||AGTCAA||Rapid run/IGM||1
| NP-SeqCap-pCancerSetB-Dec4||6-P-5||TruSeq||13||AGTCAA||Rapid run/IGM||1
|-
|-
| NP-SeqCap-pCancerSetB-Dec11||6-P-8||TruSeq||14||AGTTCC||Rapid run/IGM||1
| NP-SeqCap-pCancerSetB-Dec4||6-P-8||TruSeq||14||AGTTCC||Rapid run/IGM||1
|-
|-
| NP-SeqCap-pCancerSetB-Dec12||6-P-9||TruSeq||15||ATGTCA||Rapid run/IGM||1
| NP-SeqCap-pCancerSetB-Dec4||6-P-9||TruSeq||15||ATGTCA||Rapid run/IGM||1
|-
|-
| NP-SeqCap-pCancerSetB-Dec13||6-P-10||TruSeq||16||CCGTCC||Rapid run/IGM||1
| NP-SeqCap-pCancerSetB-Dec4||6-P-10||TruSeq||16||CCGTCC||Rapid run/IGM||1
|-
|-
| NP-SeqCap-pCancerSetB-Dec14||7-P-1||TruSeq||18||GTCCGC||Rapid run/IGM||1
| NP-SeqCap-pCancerSetB-Dec4||7-P-1||TruSeq||18||GTCCGC||Rapid run/IGM||1
|-
|-
| NP-SeqCap-pCancerSetB-Dec15||7-P-2||TruSeq||19||GTGAAA||Rapid run/IGM||1
| NP-SeqCap-pCancerSetB-Dec15||7-P-2||TruSeq||19||GTGAAA||Rapid run/IGM||1
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|}
|}
<br>
<br>
{| {{table}} border = 1
| align="center" style="width:200px;background:#f0f0f0;"|'''Library ID (for sequencing)'''
| align="center" style="width:100px;background:#f0f0f0;"|'''Sample ID'''
| align="center" style="width:140px;background:#f0f0f0;"|'''Adaptor System/primers'''
| align="center" style="width:60px;background:#f0f0f0;"|'''Index #'''
| align="center" style="width:80px;background:#f0f0f0;"|'''Seq (RC)'''
| align="center" style="width:100px;background:#f0f0f0;"|'''Sequencing platform/at'''
| align="center" style="width:60px;background:#f0f0f0;"|'''Lane #'''
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 6T-1||STD ILMN adaptor/PCR_R.N2 Indx||4||TGACCA||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 6T-2||STD ILMN adaptor/PCR_R.N2 Indx||5||ACAGTG||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 6T-3||STD ILMN adaptor/PCR_R.N2 Indx||6||GCCAAT||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 6T-4||STD ILMN adaptor/PCR_R.N2 Indx||7||CAGATC||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 6T-5||STD ILMN adaptor/PCR_R.N2 Indx||8||ACTTGA||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 7T-1||STD ILMN adaptor/PCR_R.N2 Indx||9||GATCAG||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 7T-2||STD ILMN adaptor/PCR_R.N2 Indx||10||TAGCTT||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 7T-4||STD ILMN adaptor/PCR_R.N2 Indx||12||CTTGTA||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 7T-5||STD ILMN adaptor/PCR_R.N2 Indx||13||CCATGA||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| PCT-1||STD ILMN adaptor/PCR_R.N2 Indx||14||AAGACA||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| PCT-2||STD ILMN adaptor/PCR_R.N2 Indx||15||CTTCCT||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| PCT-4||STD ILMN adaptor/PCR_R.N2 Indx||16||GGGGTT||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| PCT-6||STD ILMN adaptor/PCR_R.N2 Indx||17||CTCATC||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| PCT-7||STD ILMN adaptor/PCR_R.N2 Indx||18||AGTTCA||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2||NC-6||TruSeq||6||GCCAAT||Rapid run/IGM||2
|}

Revision as of 20:21, 25 December 2014

Summary of WGBS sequencing libraries captured by SeqCap Hybridization capture and their corresponding index

Back to calendar

1) HiSeq Rapid run at IGM (141216_SN1001_0423)

  • PE 100+7
Library ID (for sequencing) Sample ID Adaptor System/primers Index # Seq (RC) Sequencing platform/at Lane #
NP-SeqCap-pCancerSetB-Dec4 PC-P_3 TruSeq 2 CGATGT Rapid run/IGM 1
NP-SeqCap-pCancerSetB-Dec4 PC-P_5 TruSeq 4 TGACCA Rapid run/IGM 1
NP-SeqCap-pCancerSetB-Dec4 PC-P_6 TruSeq 5 ACAGTG Rapid run/IGM 1
NP-SeqCap-pCancerSetB-Dec4 PC-P_7 TruSeq 6 GCCAAT Rapid run/IGM 1
NP-SeqCap-pCancerSetB-Dec4 PC-P_8 TruSeq 7 CAGATC Rapid run/IGM 1
NP-SeqCap-pCancerSetB-Dec4 6-P-4 TruSeq 12 CTTGTA Rapid run/IGM 1
NP-SeqCap-pCancerSetB-Dec4 6-P-5 TruSeq 13 AGTCAA Rapid run/IGM 1
NP-SeqCap-pCancerSetB-Dec4 6-P-8 TruSeq 14 AGTTCC Rapid run/IGM 1
NP-SeqCap-pCancerSetB-Dec4 6-P-9 TruSeq 15 ATGTCA Rapid run/IGM 1
NP-SeqCap-pCancerSetB-Dec4 6-P-10 TruSeq 16 CCGTCC Rapid run/IGM 1
NP-SeqCap-pCancerSetB-Dec4 7-P-1 TruSeq 18 GTCCGC Rapid run/IGM 1
NP-SeqCap-pCancerSetB-Dec15 7-P-2 TruSeq 19 GTGAAA Rapid run/IGM 1
NP-SeqCap-pCancerSetB-Dec16 NC-29 TruSeq 23 GAGTGG Rapid run/IGM 1


Library ID (for sequencing) Sample ID Adaptor System/primers Index # Seq (RC) Sequencing platform/at Lane #
NP-SeqCap-tCancerSetC-Dec4 N2 6T-1 STD ILMN adaptor/PCR_R.N2 Indx 4 TGACCA Rapid run/IGM 2
NP-SeqCap-tCancerSetC-Dec4 N2 6T-2 STD ILMN adaptor/PCR_R.N2 Indx 5 ACAGTG Rapid run/IGM 2
NP-SeqCap-tCancerSetC-Dec4 N2 6T-3 STD ILMN adaptor/PCR_R.N2 Indx 6 GCCAAT Rapid run/IGM 2
NP-SeqCap-tCancerSetC-Dec4 N2 6T-4 STD ILMN adaptor/PCR_R.N2 Indx 7 CAGATC Rapid run/IGM 2
NP-SeqCap-tCancerSetC-Dec4 N2 6T-5 STD ILMN adaptor/PCR_R.N2 Indx 8 ACTTGA Rapid run/IGM 2
NP-SeqCap-tCancerSetC-Dec4 N2 7T-1 STD ILMN adaptor/PCR_R.N2 Indx 9 GATCAG Rapid run/IGM 2
NP-SeqCap-tCancerSetC-Dec4 N2 7T-2 STD ILMN adaptor/PCR_R.N2 Indx 10 TAGCTT Rapid run/IGM 2
NP-SeqCap-tCancerSetC-Dec4 N2 7T-4 STD ILMN adaptor/PCR_R.N2 Indx 12 CTTGTA Rapid run/IGM 2
NP-SeqCap-tCancerSetC-Dec4 N2 7T-5 STD ILMN adaptor/PCR_R.N2 Indx 13 CCATGA Rapid run/IGM 2
NP-SeqCap-tCancerSetC-Dec4 N2 PCT-1 STD ILMN adaptor/PCR_R.N2 Indx 14 AAGACA Rapid run/IGM 2
NP-SeqCap-tCancerSetC-Dec4 N2 PCT-2 STD ILMN adaptor/PCR_R.N2 Indx 15 CTTCCT Rapid run/IGM 2
NP-SeqCap-tCancerSetC-Dec4 N2 PCT-4 STD ILMN adaptor/PCR_R.N2 Indx 16 GGGGTT Rapid run/IGM 2
NP-SeqCap-tCancerSetC-Dec4 N2 PCT-6 STD ILMN adaptor/PCR_R.N2 Indx 17 CTCATC Rapid run/IGM 2
NP-SeqCap-tCancerSetC-Dec4 N2 PCT-7 STD ILMN adaptor/PCR_R.N2 Indx 18 AGTTCA Rapid run/IGM 2
NP-SeqCap-tCancerSetC-Dec4 N2 NC-6 TruSeq 6 GCCAAT Rapid run/IGM 2