Noi/NOTES/2014-12-25: Difference between revisions
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>Noi (Created page with "= Summary of WGBS sequencing libraries captured by SeqCap Hybridization capture and their corresponding index = '''Back to calendar''' == 1) Hi...") |
>Noi mNo edit summary |
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* PE 100+7 | * PE 100+7 | ||
{| {{table}} border = 1 | {| {{table}} border = 1 | ||
| align="center" style="background:#f0f0f0;"|'''Library ID (for sequencing)''' | | align="center" style="width:220px;background:#f0f0f0;"|'''Library ID (for sequencing)''' | ||
| align="center" style="background:#f0f0f0;"|'''Sample ID''' | | align="center" style="width:100px;background:#f0f0f0;"|'''Sample ID''' | ||
| align="center" style="background:#f0f0f0;"|'''Adaptor System/primers''' | | align="center" style="width:100px;background:#f0f0f0;"|'''Adaptor System/primers''' | ||
| align="center" style="background:#f0f0f0;"|'''Index #''' | | align="center" style="width:60px;background:#f0f0f0;"|'''Index #''' | ||
| align="center" style="background:#f0f0f0;"|'''Seq (RC)''' | | align="center" style="width:80px;background:#f0f0f0;"|'''Seq (RC)''' | ||
| align="center" style="background:#f0f0f0;"|'''Sequencing platform/at''' | | align="center" style="width:100px;background:#f0f0f0;"|'''Sequencing platform/at''' | ||
| align="center" style="background:#f0f0f0;"|'''Lane #''' | | align="center" style="width:60px;background:#f0f0f0;"|'''Lane #''' | ||
|- | |- | ||
| NP-SeqCap-pCancerSetB-Dec4||PC-P_3||TruSeq||2||CGATGT||Rapid run/IGM||1 | | NP-SeqCap-pCancerSetB-Dec4||PC-P_3||TruSeq||2||CGATGT||Rapid run/IGM||1 | ||
|- | |- | ||
| NP-SeqCap-pCancerSetB- | | NP-SeqCap-pCancerSetB-Dec4||PC-P_5||TruSeq||4||TGACCA||Rapid run/IGM||1 | ||
|- | |- | ||
| NP-SeqCap-pCancerSetB- | | NP-SeqCap-pCancerSetB-Dec4||PC-P_6||TruSeq||5||ACAGTG||Rapid run/IGM||1 | ||
|- | |- | ||
| NP-SeqCap-pCancerSetB- | | NP-SeqCap-pCancerSetB-Dec4||PC-P_7||TruSeq||6||GCCAAT||Rapid run/IGM||1 | ||
|- | |- | ||
| NP-SeqCap-pCancerSetB- | | NP-SeqCap-pCancerSetB-Dec4||PC-P_8||TruSeq||7||CAGATC||Rapid run/IGM||1 | ||
|- | |- | ||
| NP-SeqCap-pCancerSetB- | | NP-SeqCap-pCancerSetB-Dec4||6-P-4||TruSeq||12||CTTGTA||Rapid run/IGM||1 | ||
|- | |- | ||
| NP-SeqCap-pCancerSetB- | | NP-SeqCap-pCancerSetB-Dec4||6-P-5||TruSeq||13||AGTCAA||Rapid run/IGM||1 | ||
|- | |- | ||
| NP-SeqCap-pCancerSetB- | | NP-SeqCap-pCancerSetB-Dec4||6-P-8||TruSeq||14||AGTTCC||Rapid run/IGM||1 | ||
|- | |- | ||
| NP-SeqCap-pCancerSetB- | | NP-SeqCap-pCancerSetB-Dec4||6-P-9||TruSeq||15||ATGTCA||Rapid run/IGM||1 | ||
|- | |- | ||
| NP-SeqCap-pCancerSetB- | | NP-SeqCap-pCancerSetB-Dec4||6-P-10||TruSeq||16||CCGTCC||Rapid run/IGM||1 | ||
|- | |- | ||
| NP-SeqCap-pCancerSetB- | | NP-SeqCap-pCancerSetB-Dec4||7-P-1||TruSeq||18||GTCCGC||Rapid run/IGM||1 | ||
|- | |- | ||
| NP-SeqCap-pCancerSetB-Dec15||7-P-2||TruSeq||19||GTGAAA||Rapid run/IGM||1 | | NP-SeqCap-pCancerSetB-Dec15||7-P-2||TruSeq||19||GTGAAA||Rapid run/IGM||1 | ||
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|} | |} | ||
<br> | <br> | ||
{| {{table}} border = 1 | |||
| align="center" style="width:200px;background:#f0f0f0;"|'''Library ID (for sequencing)''' | |||
| align="center" style="width:100px;background:#f0f0f0;"|'''Sample ID''' | |||
| align="center" style="width:140px;background:#f0f0f0;"|'''Adaptor System/primers''' | |||
| align="center" style="width:60px;background:#f0f0f0;"|'''Index #''' | |||
| align="center" style="width:80px;background:#f0f0f0;"|'''Seq (RC)''' | |||
| align="center" style="width:100px;background:#f0f0f0;"|'''Sequencing platform/at''' | |||
| align="center" style="width:60px;background:#f0f0f0;"|'''Lane #''' | |||
|- | |||
| NP-SeqCap-tCancerSetC-Dec4 N2|| 6T-1||STD ILMN adaptor/PCR_R.N2 Indx||4||TGACCA||Rapid run/IGM||2 | |||
|- | |||
| NP-SeqCap-tCancerSetC-Dec4 N2|| 6T-2||STD ILMN adaptor/PCR_R.N2 Indx||5||ACAGTG||Rapid run/IGM||2 | |||
|- | |||
| NP-SeqCap-tCancerSetC-Dec4 N2|| 6T-3||STD ILMN adaptor/PCR_R.N2 Indx||6||GCCAAT||Rapid run/IGM||2 | |||
|- | |||
| NP-SeqCap-tCancerSetC-Dec4 N2|| 6T-4||STD ILMN adaptor/PCR_R.N2 Indx||7||CAGATC||Rapid run/IGM||2 | |||
|- | |||
| NP-SeqCap-tCancerSetC-Dec4 N2|| 6T-5||STD ILMN adaptor/PCR_R.N2 Indx||8||ACTTGA||Rapid run/IGM||2 | |||
|- | |||
| NP-SeqCap-tCancerSetC-Dec4 N2|| 7T-1||STD ILMN adaptor/PCR_R.N2 Indx||9||GATCAG||Rapid run/IGM||2 | |||
|- | |||
| NP-SeqCap-tCancerSetC-Dec4 N2|| 7T-2||STD ILMN adaptor/PCR_R.N2 Indx||10||TAGCTT||Rapid run/IGM||2 | |||
|- | |||
| NP-SeqCap-tCancerSetC-Dec4 N2|| 7T-4||STD ILMN adaptor/PCR_R.N2 Indx||12||CTTGTA||Rapid run/IGM||2 | |||
|- | |||
| NP-SeqCap-tCancerSetC-Dec4 N2|| 7T-5||STD ILMN adaptor/PCR_R.N2 Indx||13||CCATGA||Rapid run/IGM||2 | |||
|- | |||
| NP-SeqCap-tCancerSetC-Dec4 N2|| PCT-1||STD ILMN adaptor/PCR_R.N2 Indx||14||AAGACA||Rapid run/IGM||2 | |||
|- | |||
| NP-SeqCap-tCancerSetC-Dec4 N2|| PCT-2||STD ILMN adaptor/PCR_R.N2 Indx||15||CTTCCT||Rapid run/IGM||2 | |||
|- | |||
| NP-SeqCap-tCancerSetC-Dec4 N2|| PCT-4||STD ILMN adaptor/PCR_R.N2 Indx||16||GGGGTT||Rapid run/IGM||2 | |||
|- | |||
| NP-SeqCap-tCancerSetC-Dec4 N2|| PCT-6||STD ILMN adaptor/PCR_R.N2 Indx||17||CTCATC||Rapid run/IGM||2 | |||
|- | |||
| NP-SeqCap-tCancerSetC-Dec4 N2|| PCT-7||STD ILMN adaptor/PCR_R.N2 Indx||18||AGTTCA||Rapid run/IGM||2 | |||
|- | |||
| NP-SeqCap-tCancerSetC-Dec4 N2||NC-6||TruSeq||6||GCCAAT||Rapid run/IGM||2 | |||
|} |
Revision as of 20:21, 25 December 2014
Summary of WGBS sequencing libraries captured by SeqCap Hybridization capture and their corresponding index
1) HiSeq Rapid run at IGM (141216_SN1001_0423)
- PE 100+7
Library ID (for sequencing) | Sample ID | Adaptor System/primers | Index # | Seq (RC) | Sequencing platform/at | Lane # |
NP-SeqCap-pCancerSetB-Dec4 | PC-P_3 | TruSeq | 2 | CGATGT | Rapid run/IGM | 1 |
NP-SeqCap-pCancerSetB-Dec4 | PC-P_5 | TruSeq | 4 | TGACCA | Rapid run/IGM | 1 |
NP-SeqCap-pCancerSetB-Dec4 | PC-P_6 | TruSeq | 5 | ACAGTG | Rapid run/IGM | 1 |
NP-SeqCap-pCancerSetB-Dec4 | PC-P_7 | TruSeq | 6 | GCCAAT | Rapid run/IGM | 1 |
NP-SeqCap-pCancerSetB-Dec4 | PC-P_8 | TruSeq | 7 | CAGATC | Rapid run/IGM | 1 |
NP-SeqCap-pCancerSetB-Dec4 | 6-P-4 | TruSeq | 12 | CTTGTA | Rapid run/IGM | 1 |
NP-SeqCap-pCancerSetB-Dec4 | 6-P-5 | TruSeq | 13 | AGTCAA | Rapid run/IGM | 1 |
NP-SeqCap-pCancerSetB-Dec4 | 6-P-8 | TruSeq | 14 | AGTTCC | Rapid run/IGM | 1 |
NP-SeqCap-pCancerSetB-Dec4 | 6-P-9 | TruSeq | 15 | ATGTCA | Rapid run/IGM | 1 |
NP-SeqCap-pCancerSetB-Dec4 | 6-P-10 | TruSeq | 16 | CCGTCC | Rapid run/IGM | 1 |
NP-SeqCap-pCancerSetB-Dec4 | 7-P-1 | TruSeq | 18 | GTCCGC | Rapid run/IGM | 1 |
NP-SeqCap-pCancerSetB-Dec15 | 7-P-2 | TruSeq | 19 | GTGAAA | Rapid run/IGM | 1 |
NP-SeqCap-pCancerSetB-Dec16 | NC-29 | TruSeq | 23 | GAGTGG | Rapid run/IGM | 1 |
Library ID (for sequencing) | Sample ID | Adaptor System/primers | Index # | Seq (RC) | Sequencing platform/at | Lane # |
NP-SeqCap-tCancerSetC-Dec4 N2 | 6T-1 | STD ILMN adaptor/PCR_R.N2 Indx | 4 | TGACCA | Rapid run/IGM | 2 |
NP-SeqCap-tCancerSetC-Dec4 N2 | 6T-2 | STD ILMN adaptor/PCR_R.N2 Indx | 5 | ACAGTG | Rapid run/IGM | 2 |
NP-SeqCap-tCancerSetC-Dec4 N2 | 6T-3 | STD ILMN adaptor/PCR_R.N2 Indx | 6 | GCCAAT | Rapid run/IGM | 2 |
NP-SeqCap-tCancerSetC-Dec4 N2 | 6T-4 | STD ILMN adaptor/PCR_R.N2 Indx | 7 | CAGATC | Rapid run/IGM | 2 |
NP-SeqCap-tCancerSetC-Dec4 N2 | 6T-5 | STD ILMN adaptor/PCR_R.N2 Indx | 8 | ACTTGA | Rapid run/IGM | 2 |
NP-SeqCap-tCancerSetC-Dec4 N2 | 7T-1 | STD ILMN adaptor/PCR_R.N2 Indx | 9 | GATCAG | Rapid run/IGM | 2 |
NP-SeqCap-tCancerSetC-Dec4 N2 | 7T-2 | STD ILMN adaptor/PCR_R.N2 Indx | 10 | TAGCTT | Rapid run/IGM | 2 |
NP-SeqCap-tCancerSetC-Dec4 N2 | 7T-4 | STD ILMN adaptor/PCR_R.N2 Indx | 12 | CTTGTA | Rapid run/IGM | 2 |
NP-SeqCap-tCancerSetC-Dec4 N2 | 7T-5 | STD ILMN adaptor/PCR_R.N2 Indx | 13 | CCATGA | Rapid run/IGM | 2 |
NP-SeqCap-tCancerSetC-Dec4 N2 | PCT-1 | STD ILMN adaptor/PCR_R.N2 Indx | 14 | AAGACA | Rapid run/IGM | 2 |
NP-SeqCap-tCancerSetC-Dec4 N2 | PCT-2 | STD ILMN adaptor/PCR_R.N2 Indx | 15 | CTTCCT | Rapid run/IGM | 2 |
NP-SeqCap-tCancerSetC-Dec4 N2 | PCT-4 | STD ILMN adaptor/PCR_R.N2 Indx | 16 | GGGGTT | Rapid run/IGM | 2 |
NP-SeqCap-tCancerSetC-Dec4 N2 | PCT-6 | STD ILMN adaptor/PCR_R.N2 Indx | 17 | CTCATC | Rapid run/IGM | 2 |
NP-SeqCap-tCancerSetC-Dec4 N2 | PCT-7 | STD ILMN adaptor/PCR_R.N2 Indx | 18 | AGTTCA | Rapid run/IGM | 2 |
NP-SeqCap-tCancerSetC-Dec4 N2 | NC-6 | TruSeq | 6 | GCCAAT | Rapid run/IGM | 2 |