Noi/NOTES/2014-12-25: Difference between revisions

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* The WGBS libraries were captured by Nimblegen SeqCap LMS probe.
* The WGBS libraries were captured by Nimblegen SeqCap LMS probe.
* PE 100+7
* PE 100+7
{| {{table}} border = 1
| align="center" style="width:220px;background:#f0f0f0;"|'''Library ID (for sequencing)'''
| align="center" style="width:100px;background:#f0f0f0;"|'''Sample ID'''
| align="center" style="width:100px;background:#f0f0f0;"|'''Adaptor System/primers'''
| align="center" style="width:60px;background:#f0f0f0;"|'''Index #'''
| align="center" style="width:80px;background:#f0f0f0;"|'''Seq (RC)'''
| align="center" style="width:100px;background:#f0f0f0;"|'''Sequencing platform/at'''
| align="center" style="width:60px;background:#f0f0f0;"|'''Lane #'''
|-
| NP-SeqCap-pCancerSetB-Dec4||PC-P_3||TruSeq||2||CGATGT||Rapid run/IGM||1
|-
| NP-SeqCap-pCancerSetB-Dec4||PC-P_5||TruSeq||4||TGACCA||Rapid run/IGM||1
|-
| NP-SeqCap-pCancerSetB-Dec4||PC-P_6||TruSeq||5||ACAGTG||Rapid run/IGM||1
|-
| NP-SeqCap-pCancerSetB-Dec4||PC-P_7||TruSeq||6||GCCAAT||Rapid run/IGM||1
|-
| NP-SeqCap-pCancerSetB-Dec4||PC-P_8||TruSeq||7||CAGATC||Rapid run/IGM||1
|-
| NP-SeqCap-pCancerSetB-Dec4||6-P-4||TruSeq||12||CTTGTA||Rapid run/IGM||1
|-
| NP-SeqCap-pCancerSetB-Dec4||6-P-5||TruSeq||13||AGTCAA||Rapid run/IGM||1
|-
| NP-SeqCap-pCancerSetB-Dec4||6-P-8||TruSeq||14||AGTTCC||Rapid run/IGM||1
|-
| NP-SeqCap-pCancerSetB-Dec4||6-P-9||TruSeq||15||ATGTCA||Rapid run/IGM||1
|-
| NP-SeqCap-pCancerSetB-Dec4||6-P-10||TruSeq||16||CCGTCC||Rapid run/IGM||1
|-
| NP-SeqCap-pCancerSetB-Dec4||7-P-1||TruSeq||18||GTCCGC||Rapid run/IGM||1
|-
| NP-SeqCap-pCancerSetB-Dec15||7-P-2||TruSeq||19||GTGAAA||Rapid run/IGM||1
|-
| NP-SeqCap-pCancerSetB-Dec16||NC-29||TruSeq||23||GAGTGG||Rapid run/IGM||1
|}
<br>
{| {{table}} border = 1
| align="center" style="width:200px;background:#f0f0f0;"|'''Library ID (for sequencing)'''
| align="center" style="width:100px;background:#f0f0f0;"|'''Sample ID'''
| align="center" style="width:140px;background:#f0f0f0;"|'''Adaptor System/primers'''
| align="center" style="width:60px;background:#f0f0f0;"|'''Index #'''
| align="center" style="width:80px;background:#f0f0f0;"|'''Seq (RC)'''
| align="center" style="width:100px;background:#f0f0f0;"|'''Sequencing platform/at'''
| align="center" style="width:60px;background:#f0f0f0;"|'''Lane #'''
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 6T-1||STD ILMN adaptor/PCR_R.N2 Indx||4||TGACCA||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 6T-2||STD ILMN adaptor/PCR_R.N2 Indx||5||ACAGTG||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 6T-3||STD ILMN adaptor/PCR_R.N2 Indx||6||GCCAAT||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 6T-4||STD ILMN adaptor/PCR_R.N2 Indx||7||CAGATC||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 6T-5||STD ILMN adaptor/PCR_R.N2 Indx||8||ACTTGA||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 7T-1||STD ILMN adaptor/PCR_R.N2 Indx||9||GATCAG||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 7T-2||STD ILMN adaptor/PCR_R.N2 Indx||10||TAGCTT||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 7T-4||STD ILMN adaptor/PCR_R.N2 Indx||12||CTTGTA||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| 7T-5||STD ILMN adaptor/PCR_R.N2 Indx||13||CCATGA||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| PCT-1||STD ILMN adaptor/PCR_R.N2 Indx||14||AAGACA||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| PCT-2||STD ILMN adaptor/PCR_R.N2 Indx||15||CTTCCT||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| PCT-4||STD ILMN adaptor/PCR_R.N2 Indx||16||GGGGTT||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| PCT-6||STD ILMN adaptor/PCR_R.N2 Indx||17||CTCATC||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2|| PCT-7||STD ILMN adaptor/PCR_R.N2 Indx||18||AGTTCA||Rapid run/IGM||2
|-
| NP-SeqCap-tCancerSetC-Dec4 N2||NC-6||TruSeq||6||GCCAAT||Rapid run/IGM||2
|}

Revision as of 09:10, 5 January 2015

Summary of WGBS sequencing libraries captured by SeqCap Hybridization capture and their corresponding index

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1) HiSeq Rapid run at IGM (141216_SN1001_0423)

  • Library type: WGBS libraries generated by KAPA Hyper Prep kit (all cancer plasma samples). NC samples were generated by original method but lacked T4 DNA Pol, T4 polynucleotide kinase.
  • The WGBS libraries were captured by Nimblegen SeqCap LMS probe.
  • PE 100+7