EricChu:LabNotesMDA/2015-2-25: Difference between revisions

From ZhangLabWiki
Jump to navigation Jump to search
>Ericchu
(Created page with "~/data_Syn_15T/HL163/BWA$ /home/kunzhang/softwares/samtools-latest/samtools view -b -f 4 s_10_1_Indx49_sorted.bam > s_10_1_Indx49_sorted_unmapped.bam ~/data_Syn_15T/HL163/BWA$...")
 
>Ericchu
No edit summary
Line 1: Line 1:
~/data_Syn_15T/HL163/BWA$ /home/kunzhang/softwares/samtools-latest/samtools view -b -f 4 s_10_1_Indx49_sorted.bam > s_10_1_Indx49_sorted_unmapped.bam
~/data_Syn_15T/HL163/BWA$ /home/kunzhang/softwares/samtools-latest/samtools view -b -f 4 s_10_1_Indx49_sorted.bam > s_10_1_Indx49_sorted_unmapped.bam
~/data_Syn_15T/HL163/BWA$ /home/kunzhang/softwares/samtools-latest/samtools view -h s_10_1_Indx49_sorted_unmapped.bam > s_10_1_Indx49_sorted_unmapped.sam
~/data_Syn_15T/HL163/BWA$ /home/kunzhang/softwares/samtools-latest/samtools view -h s_10_1_Indx49_sorted_unmapped.bam > s_10_1_Indx49_sorted_unmapped.sam
~/data_Syn_15T/HL163/BWA$ awk '{print $10}' s_10_1_Indx49_sorted_unmapped.sam > s_10_1_Indx49_sorted_unmapped_blast.txt
~/data_Syn_15T/HL163/BWA$ awk '{print $10}' s_10_1_Indx49_sorted_unmapped.sam > s_10_1_Indx49_sorted_unmapped_blast.txt

Revision as of 19:12, 25 February 2015

~/data_Syn_15T/HL163/BWA$ /home/kunzhang/softwares/samtools-latest/samtools view -b -f 4 s_10_1_Indx49_sorted.bam > s_10_1_Indx49_sorted_unmapped.bam

~/data_Syn_15T/HL163/BWA$ /home/kunzhang/softwares/samtools-latest/samtools view -h s_10_1_Indx49_sorted_unmapped.bam > s_10_1_Indx49_sorted_unmapped.sam

~/data_Syn_15T/HL163/BWA$ awk '{print $10}' s_10_1_Indx49_sorted_unmapped.sam > s_10_1_Indx49_sorted_unmapped_blast.txt