Ns126:Calendar/NOTES/2016-1-5: Difference between revisions

From ZhangLabWiki
Jump to navigation Jump to search
>Shicheng
>Shicheng
Line 8: Line 8:
*Fastq donwload address: [[File:Haib.download.files.txt]]
*Fastq donwload address: [[File:Haib.download.files.txt]]
  xargs -n 1 curl -O -L < haib.download.files.txt
  xargs -n 1 curl -O -L < haib.download.files.txt
===Fastq Quality Control===
trim_galore --phred64 --fastqc --illumina --non_directional --rrbs *.fastq


===Fastq Alignment===
===Fastq Alignment===


===Methylation haploinfo===
===Methylation haploinfo===

Revision as of 08:27, 7 January 2016

Collection RRBS Dataset From Richard Myers, HAIB (Encode Project)

Data Description

Fastq Download

xargs -n 1 curl -O -L < haib.download.files.txt

Fastq Quality Control

trim_galore --phred64 --fastqc --illumina --non_directional --rrbs *.fastq

Fastq Alignment

Methylation haploinfo

Methylation Haplotype Load Matrix

Evaluation of the data quality

Merge with our RRBS data