Ns126:Heyn2016: Difference between revisions

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=== Fastq to Bam ===
=== Fastq to Bam ===
* Bam File Directory
TSCC: /home/ddiep/dinh_working/Bellvitge_BRI_WGBS/methylfiles/BAMfiles
Genome-miner:  /media/LTS_60T/Dinh/WGBS_LTS33/Hg19/Estellar_Bellvitge/BAMfiles


=== Bam to Hapinfo ===
=== Bam to Hapinfo ===

Revision as of 21:49, 4 March 2016

Background

Method

Sample

SRA Download

SRA to Fastq

Fastq to Bam

  • Bam File Directory
TSCC: /home/ddiep/dinh_working/Bellvitge_BRI_WGBS/methylfiles/BAMfiles
Genome-miner:  /media/LTS_60T/Dinh/WGBS_LTS33/Hg19/Estellar_Bellvitge/BAMfiles

Bam to Hapinfo

Haploinfo to Methylation Haplotype Block (MHB)

Hapinfo to Methylation Haplotype Load

trim_glore

Alignment