Daniel:Notebook/ComboLock/Sequencing: Difference between revisions
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| valign="bottom" | TTAGTG,CACCAC,GCAAGG,CGCAAC,AACTGA,ATCGGG | | valign="bottom" | TTAGTG,CACCAC,GCAAGG,CGCAAC,AACTGA,ATCGGG | ||
| align="center" | [[Daniel:Notebook/ComboLock/2017-6- | | align="center" | [[Daniel:Notebook/ComboLock/2017-6-28|June 28, 2017]] | ||
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Revision as of 22:52, 28 June 2017
Sequencing Lists
This page describes the sequencing samples submitted in the ComboLock project. It keeps track of IDs, etc.
Sequencing Table
Expected length of combolock amplicons with total sequencing length for the forward and reverse directions
Name | Length (bp) | Forward Seq. Length | Reverse Seq. Length |
LinkerL | 18 | 18 | 148 |
Primer2 | 18 | 36 | 130 |
BC-C1 | 8 | 44 | 112 |
Primer4 | 18 | 62 | 104 |
BCLatch | 8 | 70 | 86 |
UMI | 8 | 78 | 78 |
Primer6 | 18 | 96 | 70 |
BC-C2 | 8 | 104 | 52 |
Primer12 | 18 | 122 | 44 |
BCPadlock | 8 | 130 | 26 |
LinkerR | 18 | 148 | 18 |
Master List
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ20160630_CLCProbe_Test2 | 6/23/16 | 2,3,5,6 | CGATGT, TTAGGC, ACAGTG, GCCAAT | |
DEJ20160706_CL_P01 | 6/28/16 | 1-7 | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC | |
DEJ20160706_CL_C02 | 6/29/16 | 10-13 | TAGCTT, GGCTAC, CTTGTA, CCATGA | |
DEJ20160715_C03 | 7/11/16 | 16-20 | GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC | |
DEJ20160722_CL_C04 | 7/18/16 | 21,22,23,26,27 | CAACCC,CTCGGA,TCGAAA,TCGTGA,TACGCG | |
DEJ20160727_CL_C05 | 7/25/16 | 9-13 | GATCAG,TAGCTT,GGCTAC,CTTGTA,CCATGA | |
DEJ20160822_CL_PC01 | 8/18/16 | 10-13 | TAGCTT,GGCTAC,CTTGTA,CCATGA | 8/25/16 |
DEJ20160826_CL_PC02 | 8/22/16 | 33,41,42,44 | CGCAAC,GGGAAC,GAAAAG,GCATCC | 9/12/16 |
DEJ20160906_CL_PC03 | 8/29/16 | 34-36 | AACTGA,ATCGGG,CAAGCA | 9/27/16 |
DEJ201610_CL_PCC01 | 10/07/16 | 24,25 | ATTCGC,TACTGC | 10/20/16 |
DEJ-CL-RCA01-20161103 | 10/31/16 | 30,31 | TTAGTG,CACCAC | 11/18/16, 11/21/16, 12/06/16
|
DEJ-CL-CellC01-20161116 | 11/7/16 | 25 | TACTGC | 11/21/16, 12/06/16 |
DEJ20160109_CLv2_PC | 1/6/17 | 20 | CCTGTC | |
DEJ20160109_CLv3_RCA and here | 1/23/17 | 21-23,25-27 | CAACCC,CTCGGA,TCGAAA,TACTGC,TCGTGA,TACGCG | |
DEJ20170503-CLPCv3-04 | 4/28/17 | 20,24-27 | CCTGTC,ATTCGC,TACTGC,TCGTGA,TACGCG | May 16 2017 |
DEJ20170610-CLPCv3-05 | 6/5/17 | 20,21,25-27,29 | CCTGTC,CAACCC,TACTGC,TCGTGA,TACGCG,ACGAAC | June 26, 2017 |
DEJ20170610-CLAbPC-01 | 6/14/17 | 30-35 | TTAGTG,CACCAC,GCAAGG,CGCAAC,AACTGA,ATCGGG | June 28, 2017 |
Sequencing Runs 2017
Spring 2017
06-23-2017
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ20170610-CLPCv3-05 | 6/5/17 | 20,21,25-27,29 | CCTGTC,CAACCC,TACTGC,TCGTGA,TACGCG,ACGAAC | June 26, 2017 |
DEJ20170610-CLAbPC-01 | 6/14/17 | 30-35 | TTAGTG,CACCAC,GCAAGG,CGCAAC,AACTGA,ATCGGG |
05-08-2017
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ20170503-CLPCv3-04 | 4/28/17 | 20,24-27 | CCTGTC,ATTCGC,TACTGC,TCGTGA,TACGCG | May 16 2017 |
Sequencing Runs 2016
Summer 2016
07-08-2016
Sample Name | Experiment Start Date | Indexes | Index Sequences |
DEJ20160630_CLCProbe_Test2 | 6/23/16 | 2,3,5,6 | CGATGT, TTAGGC, ACAGTG, GCCAAT |
DEJ20160706_CL_P01 | 6/28/16 | 1-7 | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC |
DEJ20160706_CL_C02 | 6/29/16 | 10-13 | TAGCTT, GGCTAC, CTTGTA, CCATGA |
07-15-2016
Sample Name | Experiment Start Date | Indexes | Index Sequences |
DEJ20160630_CLCProbe_Test2 | 6/23/16 | 2,3,5,6 | CGATGT, TTAGGC, ACAGTG, GCCAAT |
DEJ20160706_CL_P01 | 6/28/16 | 1-7 | ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC |
DEJ20160706_CL_C02 | 6/29/16 | 10-13 | TAGCTT, GGCTAC, CTTGTA, CCATGA |
DEJ20160715_C03 | 7/11/16 | 16-20 | GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC |
08-22-2016
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ20160822_CL_PC01 | 8/18/16 | 10-13 | TAGCTT,GGCTAC,CTTGTA,CCATGA | Analysis and Results |
08-26-2016
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ20160826_CL_PC02 | 8/22/16 | 33, 40-42 | CGCAAC,TGACGG,GGGAAC,GAAAAG | 9/12/16 |
Fall 2016
09-12-2016
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ20160906_CL_PC03 | 8/29/16 | 34-36 | AACTGA,ATCGGG,CAAGCA | 9/27/16 |
10-18-2016
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ20161013_CL_PCC01 | 10/7/16 | 24,25 | ATTCGC,TACTGC | 10/20/16 |
11-10-2016
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ-CL-RCA01-20161103 | 10/31/16 | 30,31 | TTAGTG,CACCAC | 11/18/16 |
11-17-2016
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ-CL-CellC01-20161116 | 11/7/16 | 25 | TACTGC | 11/21/16 |
DEJ-CL-RCA01-20161103 | 10/31/16 | 30,31 | TTAGTG,CACCAC | 11/21/16
|
12-05-2016
Sample Name | Experiment Start Date | Indexes | Index Sequences | Results |
DEJ-CL-CellC01-20161116 | 11/7/16 | 25 | TACTGC | 12/6/16 |
DEJ-CL-RCA01-20161103 | 10/31/16 | 30,31 | TTAGTG,CACCAC | 12/6/16
|