Our own data alignment and analysis: Difference between revisions
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>Shicheng No edit summary |
>Shicheng No edit summary |
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cat s_*_2_Indx$i.txt.gz > Indx$i.read2.fq.gz & | cat s_*_2_Indx$i.txt.gz > Indx$i.read2.fq.gz & | ||
done | done | ||
* [[RD>90 and Len>80bp Regions]] | |||
=== Trim_galore === | === Trim_galore === |
Revision as of 23:12, 1 September 2016
fastq merge by indx
for i in {01,02,04,05,06,07,09,10,11,12} do cat s_*_1_Indx$i.txt.gz > Indx$i.read1.fq.gz & cat s_*_2_Indx$i.txt.gz > Indx$i.read2.fq.gz & done
- [[RD>90 and Len>80bp Regions]]