Alice:LabNotes/2007-12-5: Difference between revisions
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Sample 7<br> | Sample 7<br> | ||
[[Image:SNP 7.png]]<br> | [[Image:SNP 7.png]]<br> | ||
The two samples we are really interested in are sample #6 and #7. The sample is GM20431 cDNA with rs 1264899 forward and reverse primer. The SNP location is rs 1264899. Then we will use software PeakPicker to compare and quantize the peaks. | The two samples we are really interested in are sample #6 and #7. The sample is GM20431 cDNA with rs 1264899 forward and reverse primer. The SNP location is rs 1264899. Then we will use software PeakPicker to compare and quantize the peaks.<br> | ||
Here are the files of the original sequencing result files:<br> | |||
* [https://genome-tech.ucsd.edu/LabNotes/index.php/Alice:LabNotes/2007-12-5/ZL1-cust.ab1 ZL1-cust] <br> | |||
* [https://genome-tech.ucsd.edu/LabNotes/index.php/Alice:LabNotes/2007-12-5/ZL2-cust.ab1 ZL2-cust]<br> | |||
* [https://genome-tech.ucsd.edu/LabNotes/index.php/Alice:LabNotes/2007-12-5/ZL3-cust.ab1 ZL3-cust]<br> | |||
* [https://genome-tech.ucsd.edu/LabNotes/index.php/Alice:LabNotes/2007-12-5/ZL4-cust.ab1 ZL4-cust]<br> | |||
* [https://genome-tech.ucsd.edu/LabNotes/index.php/Alice:LabNotes/2007-12-5/ZL5-cust.ab1 ZL5-cust]<br> | |||
* [https://genome-tech.ucsd.edu/LabNotes/index.php/Alice:LabNotes/2007-12-5/ZL6-cust.ab1 ZL6-cust]<br> | |||
* [https://genome-tech.ucsd.edu/LabNotes/index.php/Alice:LabNotes/2007-12-5/ZL7-cust.ab1 ZL7-cust]<br> |
Revision as of 05:36, 1 January 2008
The sequencing results finally worked!
Sample | SNP | Sequencing result | |
1 | rs3753565 | yes | |
2 | rs2295680 | yes | |
3 | rs6103 | no | |
4 | rs1264899 | yes | |
5 | rs1264899 | yes | |
6 | rs1264899 | yes | |
7 | rs1264899 | yes | |
Sample 1
File:SNP 1.png
Sample 2
File:SNP 2.png
Sample 4
File:SNP 4.png
Sample 5
File:SNP 5.png
Sample 6
File:SNP 6.png
Sample 7
File:SNP 7.png
The two samples we are really interested in are sample #6 and #7. The sample is GM20431 cDNA with rs 1264899 forward and reverse primer. The SNP location is rs 1264899. Then we will use software PeakPicker to compare and quantize the peaks.
Here are the files of the original sequencing result files: