Noi/NOTES/2012-6-27

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Revision as of 19:58, 27 June 2012 by >Noi
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Mapping of ASM and ASCM samples in human cells project to hg19

Sample indexes

Sample IDs Index
GM12878 AmpR6.3.Ind73
P10E3 AmpR6.3.Ind74
DF2 AmpR6.3.Ind75
H0 AmpR6.3.Ind76
H7 AmpR6.3.Ind77
H14 AmpR6.3.Ind78
H16 AmpR6.3.Ind79
GM12878:H0 1:1 AmpR6.3.Ind80

Concatenate sequences and trim 27 bp from 5'end (on genome-miner)

* Note: Length of the raw data 110bp
less	/media/SeqStore2/120608_SN1001/BSPP/s_8_*_Indx73.txt	| /home/kunzhang/bin/trimFastq.pl 	27 83>	GM12878
less	/media/SeqStore2/120608_SN1001/BSPP/s_8_*_Indx74.txt	| /home/kunzhang/bin/trimFastq.pl 	27 83>	P10E3
less	/media/SeqStore2/120608_SN1001/BSPP/s_8_*_Indx75.txt	| /home/kunzhang/bin/trimFastq.pl 	27 83>	DF2
less	/media/SeqStore2/120608_SN1001/BSPP/s_8_*_Indx76.txt	| /home/kunzhang/bin/trimFastq.pl 	27 83>	H0
less	/media/SeqStore2/120608_SN1001/BSPP/s_8_*_Indx77.txt	| /home/kunzhang/bin/trimFastq.pl 	27 83>	H7
less	/media/SeqStore2/120608_SN1001/BSPP/s_8_*_Indx78.txt	| /home/kunzhang/bin/trimFastq.pl 	27 83>	H14
less	/media/SeqStore2/120608_SN1001/BSPP/s_8_*_Indx79.txt	| /home/kunzhang/bin/trimFastq.pl 	27 83>	H16
less	/media/SeqStore2/120608_SN1001/BSPP/s_8_*_Indx80.txt	| /home/kunzhang/bin/trimFastq.pl 	27 83>	GM12878-H0

Mapping to hg19 (on Triton cluster)