Noi/NOTES/2012-6-27
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Mapping of ASM and ASCM samples in human cells project to hg19
- Refer to the capture experiment on: http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-5-24, http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-5-31
- The libraries were sequenced on HiSeq 120608_SN1001 run (at Biogem) ,lane 8.
- Sequencing data on genome-miner: /media/SeqStore2/120608_SN1001/BSPP
Sample indexes
Sample IDs | Index |
GM12878 | AmpR6.3.Ind73 |
P10E3 | AmpR6.3.Ind74 |
DF2 | AmpR6.3.Ind75 |
H0 | AmpR6.3.Ind76 |
H7 | AmpR6.3.Ind77 |
H14 | AmpR6.3.Ind78 |
H16 | AmpR6.3.Ind79 |
GM12878:H0 1:1 | AmpR6.3.Ind80 |
Concatenate sequences and trim 27 bp from 5'end (on genome-miner)
* Note: Length of the raw data 110bp less /media/SeqStore2/120608_SN1001/BSPP/s_8_*_Indx73.txt | /home/kunzhang/bin/trimFastq.pl 27 83> GM12878 less /media/SeqStore2/120608_SN1001/BSPP/s_8_*_Indx74.txt | /home/kunzhang/bin/trimFastq.pl 27 83> P10E3 less /media/SeqStore2/120608_SN1001/BSPP/s_8_*_Indx75.txt | /home/kunzhang/bin/trimFastq.pl 27 83> DF2 less /media/SeqStore2/120608_SN1001/BSPP/s_8_*_Indx76.txt | /home/kunzhang/bin/trimFastq.pl 27 83> H0 less /media/SeqStore2/120608_SN1001/BSPP/s_8_*_Indx77.txt | /home/kunzhang/bin/trimFastq.pl 27 83> H7 less /media/SeqStore2/120608_SN1001/BSPP/s_8_*_Indx78.txt | /home/kunzhang/bin/trimFastq.pl 27 83> H14 less /media/SeqStore2/120608_SN1001/BSPP/s_8_*_Indx79.txt | /home/kunzhang/bin/trimFastq.pl 27 83> H16 less /media/SeqStore2/120608_SN1001/BSPP/s_8_*_Indx80.txt | /home/kunzhang/bin/trimFastq.pl 27 83> GM12878-H0