Daniel:Notebook/GenomeMiner/2013-7-18

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Revision as of 21:20, 18 July 2013 by >Djacobse
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HL155

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=Bowtie Indexing

Using the fasta files I created Tuesday, I created an index file.

Creating the Index File

 bowtie2-build -f Probelist_Set1.fa,Probelist_Set2.fa,Probelist_Set3.fa,Probelist_Set4.fa hcrp_probeseq

Test Bowtie2 Command Line

bowtie2 -x hcrp_probeseq -U s_2_1_Indx12.fq,s_2_1_Indx53.fq,s_2_1_Indx54.fq -S testSAMout &