Daniel:Notebook/GenomeMiner/2013-8-28

From ZhangLabWiki
Revision as of 18:04, 28 August 2013 by >Djacobse
Jump to navigation Jump to search

HL155

Slim Indexing Analysis

Counted Errors Using Modified Perl Script from Matt

Script:

Raw Error Counts


Error Percentages

  Mycroarray Slim Error %
Error Rate 2.03106318468037
Insertions 0.10772186493141
Deletions 1.17707730956392
Substitutions 0.746264010185034

Counting Results From Index 10-13

Print Only 3rd Column

awk '{print $3}' hrcp_sortfilt_slimindex_eq.sam > readlist.txt

Perl Script to Count Total Probe Number