Daniel:Notebook/GenomeMiner/2013-9-3

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Revision as of 20:50, 3 September 2013 by >Djacobse (→‎HL155)
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HL155

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Matt discovered that the MYcroarray probe set may not be aligning well due because we should be aligning to the reverse complement of the probe sequences we've been using. As such, Matt did the analysis, and the results changed fairly dramatically.

  V4S1 V4S2 V4S3 V4S4 V6S1 V6S2 V6S3 V6S4 Weighted Average (%)
Overall Error Rate 1.33% 1.32% 1.32% 1.19% 1.17% 1.13% 1.18% 1.15% 1.19
Insertions 0.26% 0.21% 0.24% 0.24% 0.19% 0.18% 0.19% 0.21% 0.20
Deletions 0.05% 0.04% 0.04% 0.05% 0.04% 0.04% 0.04% 0.05% 0.04
Substitutions 1.01% 1.07% 1.04% 0.90% 0.94% 0.91% 0.95% 0.89% 0.94
Number of Probes 2959 3600 5850 5987 16559 16400 13000 13314