Chris:LabNotes/Moleculo/2013/2013-6-27

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Perform Megan analysis to determine the species to which the assembled contigs mapped

Background

  • We suspect something's wrong with the assembly because we obtained a very low mapping rate of reads back to the assembled contigs

Procedure

  • See genome-miner: </home/samchiang/Sam_Ext12T/Chris/130419_Oncomelania_Ilumina_Moleculo/megan_analysis>