Daniel:Notebook/GenomeMiner/2013-10-3

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Revision as of 18:33, 3 October 2013 by >Djacobse
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HL155

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Novoalign on HL155 (Started 10/02/2013)

Concatenate fq files into 1

cat s_2_1_Indx11.txt s_2_1_Indx12.txt s_2_1_Indx13.txt s_3_1_Indx10.txt s_3_1_Indx11.txt s_3_1_Indx12.txt > hl155_indx10to13.fq

Novoalign on V4S1

novoalign -d index_v4s1fullrevcomp.ndx -f ../../hl155_indx10to13.fq -F ILMFQ -r ALL -o SAM -o FULLNW > novo_v4s1.sam