Noi/NOTES/2014-9-14
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Summary of BSPP capture sequencing libraries and their corresponding index
1) HiSeq Rapid run at Illumina (140912_D00171_0588)
Library ID | Sample ID | Zhang's lab Index | Template type | InputDNA amount (ng) | BSPP set | Sequencing platform/at | Lane # | Note |
NP-BSPP_V5A_CRC-ctDNA-Sep10 | cfDNA | 4 | WGBS library | 100 | MONOD V5 setA /CRC | Rapid run/ILMN | 1,2 | ctDNA from Illumina. WGBS library generated 5ng of ctDNA. |
NP-BSPP_V5A_CRC-ctDNA-Sep11 | NORM1-02 P1 | 5 | WGBS library | 100 | MONOD V5 setA /CRC | Rapid run/ILMN | 1,2 | ctDNA from Illumina. WGBS library generated 5ng of ctDNA. |
NP-BSPP_V5A_CRC-ctDNA-Sep12 | NORM1-03 P1 | 6 | WGBS library | 100 | MONOD V5 setA /CRC | Rapid run/ILMN | 1,2 | ctDNA from Illumina. WGBS library generated 5ng of ctDNA. |
NP-BSPP_V5A_CRC-ctDNA-Sep13 | COLO2-03 | 7 | WGBS library | 100 | MONOD V5 setA /CRC | Rapid run/ILMN | 1,2 | ctDNA from Illumina. WGBS library generated 5ng of ctDNA. |
NP-BSPP_V5A_CRC-ctDNA-Sep14 | NC-6 | 13 | WGBS library | 100 | MONOD V5 setA /CRC | Rapid run/ILMN | 1,2 | Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA. |
NP-BSPP_V5A_CRC-ctDNA-Sep15 | NC-9 | 14 | WGBS library | 100 | MONOD V5 setA /CRC | Rapid run/ILMN | 1,2 | Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA. |
NP-BSPP_V5A_CRC-ctDNA-Sep16 | NC-27 | 15 | WGBS library | 100 | MONOD V5 setA /CRC | Rapid run/ILMN | 1,2 | Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA. |
NP-BSPP_V5A_CRC-ctDNA-Sep17 | NC-30 | 16 | WGBS library | 100 | MONOD V5 setA /CRC | Rapid run/ILMN | 1,2 | Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA. |
1) HiSeq Rapid run at Illumina (140912_D00171_0589)
Library ID | Sample ID | Zhang's lab Index | Template type | InputDNA amount (ng) | BSPP set | Sequencing platform/at | Lane # | Note |
NP-BSPP_V5A_CRC-colon-Sep5 | 6-P-2 | 17 | WGBS library | 100 | MONOD V5 setA/CRC | Rapid run/ILMN | 1,2 | Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA. |
NP-BSPP_V5A_CRC-colon-Sep5 | 6-P-3 | 18 | WGBS library | 100 | MONOD V5 setA/CRC | Rapid run/ILMN | 1,2 | Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA. |
NP-BSPP_V5A_CRC-colon-Sep5 | 6-P-4 | 19 | WGBS library | 100 | MONOD V5 setA/CRC | Rapid run/ILMN | 1,2 | Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA. |
NP-BSPP_V5A_CRC-colon-Sep5 | 6-P-5 | 20 | WGBS library | 100 | MONOD V5 setA/CRC | Rapid run/ILMN | 1,2 | Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA. |
NP-BSPP_V5A_CRC-colon-Sep5 | 6-T-2 | 23 | bis gDNA | 100 | MONOD V5 setA/CRC | Rapid run/ILMN | 1,2 | Solid tumor tissue from UCSD-006 project |
NP-BSPP_V5A_CRC-colon-Sep5 | 6-T-3 | 24 | bis gDNA | 100 | MONOD V5 setA/CRC | Rapid run/ILMN | 1,2 | Solid tumor tissue from UCSD-006 project |
NP-BSPP_V5A_CRC-colon-Sep5 | 6-T-4 | 25 | bis gDNA | 100 | MONOD V5 setA/CRC | Rapid run/ILMN | 1,2 | Solid tumor tissue from UCSD-006 project |
NP-BSPP_V5A_CRC-colon-Sep5 | 6-T-5 | 26 | bis gDNA | 100 | MONOD V5 setA/CRC | Rapid run/ILMN | 1,2 | Solid tumor tissue from UCSD-006 project |