Daniel:Notebook/Haplotyping/BAC-HiC

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Revision as of 21:26, 9 December 2015 by >Djacobse (→‎Processing)
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Processing BAC and Hi-C Data

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This page describes the data processing for the BAC data in the haplotyping project. For data locations, visit the Data Map.

Processing

  1. The data starts as the uncombined hair files
    1. Merge script for combining
    2. Hi-C Data Processing and BAC Data Processing
  2. Next, run hapcut in the log likelihood format
    1. HAPCUT script