Ns126:Heyn2016

From ZhangLabWiki
Revision as of 22:35, 4 March 2016 by >Shicheng
Jump to navigation Jump to search

Background

Method

Sample

SRA Download

SRA to Fastq

Fastq to Bam

Bam to Hapinfo

  • Bam File Directory
TSCC: /home/ddiep/dinh_working/Bellvitge_BRI_WGBS/methylfiles/BAMfiles
Genome-miner:  /media/LTS_60T/Dinh/WGBS_LTS33/Hg19/Estellar_Bellvitge/BAMfiles
  • Bam to hapinfo


Haploinfo to Methylation Haplotype Block (MHB)

Hapinfo to Methylation Haplotype Load

trim_glore

Alignment