Daniel:Notebook/ComboLock/2016-7-6

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Sequential Hybridization Test (Started yesterday)

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Protocol

  1. Circularization
    1. Heat inactivate enzyme by incubating for 2 minutes at 94C
  2. Exonuclease Digestion
    1. Prepare exonuclease I/III mix by mixing 10 uL exonuclease I (20 units/μL) and 2 uL exonuclease III (100 units/μL) in 1:1 ratio
    2. Add 2 μL of exonuclease I/III mix to reaction
    3. Mix the reaction by swirling pipette around the well 5 times
    4. Incubate reaction at 37 ºC for 2 hours
    5. Heat inactivate enzyme by incubating at 94C for 5 minutes
  3. qPCR
    1. Set up reaction according to table
    2. Sample Lane Batch AmpR Index Cells 2X Kapa SYBR qPCR MM 100 uM AmpF 6.4 10 uM AmpR6.3-IndXX H2O Total Volume (uL)
      Sample 1 A1 B1 22 2 25 0.5 5 17.5 50
      Sample 2 A2 B2 23 2 25 0.5 5 17.5 50
      Sample 3 A3 B3 24 2 25 0.5 5 17.5 50
      Sample 4 A4 B4 25 2 25 0.5 5 17.5 50
      Sample 5 A5 B5 26 2 25 0.5 5 17.5 50
      Sample 6 A6 NTC 27 2 25 0.5 5 19.5 50
    3. Master Mix
      1. 165 uL KAPA SyberFast MM
      2. 116 uL nfH2O
      3. 3.3 uL AmpF 6.4
    4. Add 43 uL Master Mix to each well
    5. qPCR Cycles
      1. 95C 3 min
      2. 95C 3 sec
      3. 55C 30 sec
      4. 72C 20 sec
      5. plate read
      6. goto b x20
      7. 72C 2 min
      8. 16C hold

    qPCR Results

    Antibody Stage 2 Test 2 (Started 6-28-2016)

    Continued from results on 7-1-2016

    Source ng/uL uL added final mass (ng)
    Ab1 15 20 300