Revision as of 23:31, 30 January 2017 by >Djacobse
Sequencing Lists
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This page describes the sequencing samples submitted in the ComboLock project. It keeps track of IDs, etc.
Zhang Lab Indexes
Sequencing Table
Expected length of combolock amplicons with total sequencing length for the forward and reverse directions
Name
|
Length (bp)
|
Forward Seq. Length
|
Reverse Seq. Length
|
LinkerL
|
18
|
18
|
148
|
Primer2
|
18
|
36
|
130
|
BC-C1
|
8
|
44
|
112
|
Primer4
|
18
|
62
|
104
|
BCLatch
|
8
|
70
|
86
|
UMI
|
8
|
78
|
78
|
Primer6
|
18
|
96
|
70
|
BC-C2
|
8
|
104
|
52
|
Primer12
|
18
|
122
|
44
|
BCPadlock
|
8
|
130
|
26
|
LinkerR
|
18
|
148
|
18
|
Master List
Sample Name
|
Experiment Start Date
|
Indexes
|
Index Sequences
|
Results
|
DEJ20160630_CLCProbe_Test2
|
6/23/16
|
2,3,5,6
|
CGATGT, TTAGGC, ACAGTG, GCCAAT
|
|
DEJ20160706_CL_P01
|
6/28/16
|
1-7
|
ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC
|
|
DEJ20160706_CL_C02
|
6/29/16
|
10-13
|
TAGCTT, GGCTAC, CTTGTA, CCATGA
|
|
DEJ20160715_C03
|
7/11/16
|
16-20
|
GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC
|
|
DEJ20160722_CL_C04
|
7/18/16
|
21,22,23,26,27
|
CAACCC,CTCGGA,TCGAAA,TCGTGA,TACGCG
|
|
DEJ20160727_CL_C05
|
7/25/16
|
9-13
|
GATCAG,TAGCTT,GGCTAC,CTTGTA,CCATGA
|
|
DEJ20160822_CL_PC01
|
8/18/16
|
10-13
|
TAGCTT,GGCTAC,CTTGTA,CCATGA
|
8/25/16
|
DEJ20160826_CL_PC02
|
8/22/16
|
33,41,42,44
|
CGCAAC,GGGAAC,GAAAAG,GCATCC
|
9/12/16
|
DEJ20160906_CL_PC03
|
8/29/16
|
34-36
|
AACTGA,ATCGGG,CAAGCA
|
9/27/16
|
DEJ201610_CL_PCC01
|
10/07/16
|
24,25
|
ATTCGC,TACTGC
|
10/20/16
|
DEJ-CL-RCA01-20161103
|
10/31/16
|
30,31
|
TTAGTG,CACCAC
|
11/18/16, 11/21/16, 12/06/16
|
DEJ-CL-CellC01-20161116
|
11/7/16
|
25
|
TACTGC
|
11/21/16, 12/06/16
|
DEJ20160109_CLv2_PC
|
1/6/17
|
20
|
CCTGTC
|
|
DEJ20160109_CLv3_RCA and here
|
1/23/17
|
21-23,25-27
|
CAACCC,CTCGGA,TCGAAA,TACTGC,TCGTGA,TACGCG
|
|
Sequencing Runs 2016
Summer 2016
07-08-2016
Sample Name
|
Experiment Start Date
|
Indexes
|
Index Sequences
|
DEJ20160630_CLCProbe_Test2
|
6/23/16
|
2,3,5,6
|
CGATGT, TTAGGC, ACAGTG, GCCAAT
|
DEJ20160706_CL_P01
|
6/28/16
|
1-7
|
ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC
|
DEJ20160706_CL_C02
|
6/29/16
|
10-13
|
TAGCTT, GGCTAC, CTTGTA, CCATGA
|
07-15-2016
Sample Name
|
Experiment Start Date
|
Indexes
|
Index Sequences
|
DEJ20160630_CLCProbe_Test2
|
6/23/16
|
2,3,5,6
|
CGATGT, TTAGGC, ACAGTG, GCCAAT
|
DEJ20160706_CL_P01
|
6/28/16
|
1-7
|
ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC
|
DEJ20160706_CL_C02
|
6/29/16
|
10-13
|
TAGCTT, GGCTAC, CTTGTA, CCATGA
|
DEJ20160715_C03
|
7/11/16
|
16-20
|
GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC
|
08-22-2016
08-26-2016
Fall 2016
09-12-2016
10-18-2016
11-10-2016
11-17-2016
12-05-2016