Our own data alignment and analysis

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Revision as of 23:12, 1 September 2016 by >Shicheng
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fastq merge by indx

for i in {01,02,04,05,06,07,09,10,11,12}
do
cat s_*_1_Indx$i.txt.gz > Indx$i.read1.fq.gz &
cat s_*_2_Indx$i.txt.gz > Indx$i.read2.fq.gz &
done

RD90 and L80bp Regions

Trim_galore

bismark alignment

RD>10 Regions