Our own data alignment and analysis
Jump to navigation
Jump to search
Transfer data from Genome-miner to TSCC
- md5 to check the integrity
cd /home/shg047/oasis/mouse/alice/raw
for i in `ls *txt.gz` do md5sum $i > $i.md5 & done
scp shg047@genome-miner.ucsd.edu:/media/NAS3_volume1/SeqStore2016/130104_SN1001/* ./
for i in `ls *txt.gz` do md5sum $i > $i.md5 & done
fastq merge by indx
for i in {01,02,04,05,06,07,09,10,11,12} do cat s_*_1_Indx$i.txt.gz > Indx$i.read1.fq.gz & cat s_*_2_Indx$i.txt.gz > Indx$i.read2.fq.gz & done