Revision as of 21:37, 24 July 2010 by >Dinh
BSPP Data from HL064
File
|
Total
|
#Mapped
|
Total F&R
|
% Mapped
|
s1 - BJiPS.DMR220K.txt.fwd.soap.out |
19284556 |
8715423 |
15348294 |
0.795885266946255
|
s1 - BJiPS.DMR220K.txt.rev.soap.out |
19284556 |
6632871 |
|
|
s3 - PGP1iPS.97K.txt.fwd.soap.out |
18278561 |
6647739 |
13048545 |
0.713871567898589
|
s3 - PGP1iPS.97K.txt.rev.soap.out |
18278561 |
6400806 |
|
|
s4 - PGP1fib.97K.txt.fwd.soap.out |
14865064 |
4765887 |
9475863 |
0.637458607645416
|
s4 - PGP1fib.97K.txt.rev.soap.out |
14865064 |
4709976 |
|
|
s5 - 01192B09.txt.fwd.soap.out |
17014633 |
4497325 |
8909772 |
0.523653492849361
|
s5 - 01192B09.txt.rev.soap.out |
17014633 |
4412447 |
|
|
s6 - 01373A17.txt.fwd.soap.out |
17755423 |
6140866 |
11995320 |
0.675586270177849
|
s6 - 01373A17.txt.rev.soap.out |
17755423 |
5854454 |
|
|
s7 - 01373B09.txt.fwd.soap.out |
16901995 |
5794389 |
11360060 |
0.672113558192391
|
s7 - 01373B09.txt.rev.soap.out |
16901995 |
5565671 |
|
|
s8 - 07292B09.txt.fwd.soap.out |
18621718 |
7544808 |
15108002 |
0.81131085756964
|
s8 - 07292B09.txt.rev.soap.out |
18621718 |
7563194 |
|
|
File
|
CpG Covered >=10x
|
Average Coverage
|
01192B09.txt.clean.soap.fwd.out.fwd.pileup.methylFreq.BED.txt |
94313 |
33.2471027323911
|
01373A17.txt.clean.soap.fwd.out.fwd.pileup.methylFreq.BED.txt |
90615 |
35.0399492357777
|
01373B09.txt.clean.soap.fwd.out.fwd.pileup.methylFreq.BED.txt |
103324 |
34.6895106654795
|
07292B09.txt.clean.soap.fwd.out.fwd.pileup.methylFreq.BED.txt |
99666 |
36.7683262095399
|
BJiPS.DMR220K.txt.clean.soap.fwd.out.fwd.pileup.methylFreq.BED.txt |
12 |
11.3333333333333
|
PGP1fib.97K.txt.clean.soap.fwd.out.fwd.pileup.methylFreq.BED.txt |
80301 |
33.4409285064943
|
PGP1iPS.97K.txt.clean.soap.fwd.out.fwd.pileup.methylFreq.BED.txt |
141707 |
34.4084413614006
|
F & R Methyl Freq Correlation:
(B1) 01192B09-2: r^2=0.9453
(B3) 01373A17-2: r^2=0.9418
(B4) 01373B09-2: r^2=0.9535
(B14)07292B09-2: r^2=0.939
File:Hcorcluster-0 bc matrix.png
File:Hcorcluster-2 bc matrix.png