Nongluk (Noi) Plongthongkum

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Revision as of 19:04, 22 March 2012 by >Noi
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Sample tracking

Current Projects

  • Targeted bisulfite sequencing
    • Schizophrenia (UCLA, Roel Ophoff):
      • BSPP capture: [[1]]
      • Mapping
      • Sample identity check by Dinh (checked after combining three batches of sequencing data):
        • Homozygous SNPs and heterozygous SNPs call for X chromosome to identify males vs. females: [[3]]
        • Genetic distance: [[4]]
      • Mid-parent offspring (mpo) analysis
        • Preliminary result by Dr. Zhang: [[5]]
        • Analysis of combining data (4 batches of sequencing data): [[6]]
      • mQTL analysis: [[7]]
      • ASM analysis: [[8]]
      • Regression analysis:
    • Geographic Astrophy (GA) (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh
      • BSPP capture: [[9]] --> note: this experiment failed in amplification step [[10]]
      • Regression analysis by Dr. Zhang: [[11]]
    • HAPMAP project (HAPMAP PT01, two families, 1362 and 1464)
      • BSPP capture:
      • Mapping statistic: [[12]]
      • ASM analysis:
        • Preliminary analysis of sequence-dependent ASM: [[13]]
        • Sequence dependent test by Dinh: [[14]]
    • Randomly tagging primers (with Athurva and Dinh)
      • PCR condition optimization: [[15]] [[16]] [[17]] [[18]]
      • Colony PCR and sequence verification by Sanger's sequencing: [[19]] [[20]]

2012

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2011

<calendar> name=Noi DMR220 LabNotes format=%name/NOTES/%year-%month-%day date=2011/01/01 view=oneyear </calendar>

2010

<calendar> name=Noi DMR220 LabNotes format=%name/NOTES/%year-%month-%day date=2010/10/01 view=oneyear </calendar>