Noi/NOTES/2011-3-17

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Revision as of 23:51, 19 March 2011 by >Noi
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Data analysis of sequencing library of Parkinson's patient samples from Burnham

  • Sequencing library ID: NP-220K-Parkinson_Ind1-18-Feb15, HL089 run
  • Library construction: [[1]]

DMR220k mapping by SOAP

Sample Fastq file #Mappable reads #Mapped reads Mapping Rate Combined Mapping Rate
P1C P1C_1.txt.fwd.soap.PE.out 11587217 4532458 39.12 75.28
P1C_1.txt.rev.soap.PE.out 11587217 4189445 36.16
P2C P2C_1.txt.fwd.soap.PE.out 15881433 6006681 37.82 71.97
P2C_1.txt.rev.soap.PE.out 15881433 5422813 34.15
P3C P3C_1.txt.fwd.soap.PE.out 11143726 4292874 38.52 74.06
P3C_1.txt.rev.soap.PE.out 11143726 3960855 35.54
P4C P4C_1.txt.fwd.soap.PE.out 12849788 4630353 36.03 69.19
P4C_1.txt.rev.soap.PE.out 12849788 4261621 33.16
P5C P5C_1.txt.fwd.soap.PE.out 14221122 5724586 40.25 77.03
P5C_1.txt.rev.soap.PE.out 14221122 5230402 36.78
P6C P6C_1.txt.fwd.soap.PE.out 14112863 5168312 36.62 70.35
P6C_1.txt.rev.soap.PE.out 14112863 4760129 33.73
P7C1 P7C1_1.txt.fwd.soap.PE.out 13273426 5029339 37.89 72.48
P7C1_1.txt.rev.soap.PE.out 13273426 4590775 34.59
P7C2 P7C2_1.txt.fwd.soap.PE.out 10804019 4102770 37.97 73.93
P7C2_1.txt.rev.soap.PE.out 10804019 3884944 35.96
P8C P8C_1.txt.fwd.soap.PE.out 11113577 3978002 35.79 68.72
P8C_1.txt.rev.soap.PE.out 11113577 3660086 32.93
P1P P1P_1.txt.fwd.soap.PE.out 11887236 4435830 37.32 71.4
P1P_1.txt.rev.soap.PE.out 11887236 4051377 34.08
P2P P2P_1.txt.fwd.soap.PE.out 10570835 3719618 35.19 67.49
P2P_1.txt.rev.soap.PE.out 10570835 3414342 32.3
P3P P3P_1.txt.fwd.soap.PE.out 12343982 4467880 36.19 69.43
P3P_1.txt.rev.soap.PE.out 12343982 4103164 33.24
P4P P4P_1.txt.fwd.soap.PE.out 13306437 4612404 34.66 66.16
P4P_1.txt.rev.soap.PE.out 13306437 4191194 31.5
P5P P5P_1.txt.fwd.soap.PE.out 16356159 6335050 38.73 75.05
P5P_1.txt.rev.soap.PE.out 16356159 5941194 36.32
P6P P6P_1.txt.fwd.soap.PE.out 12406211 4691026 37.81 72.84
P6P_1.txt.rev.soap.PE.out 12406211 4345710 35.03
P7P P7P_1.txt.fwd.soap.PE.out 14361383 5263978 36.65 71.46
P7P_1.txt.rev.soap.PE.out 14361383 4998621 34.81
P8P1 P8P1_1.txt.fwd.soap.PE.out 15686569 6074276 38.72 74.48
P8P1_1.txt.rev.soap.PE.out 15686569 5608916 35.76
P8P2 P8P2_1.txt.fwd.soap.PE.out 13317181 4960421 37.25 72.68
P8P2_1.txt.rev.soap.PE.out 13317181 4718163 35.43