Noi/NOTES/2012-7-6
Jump to navigation
Jump to search
Preparation of sheared gDNA for WGBS
Sample list
- Ideally Dr. Zhang wants me to prepare WGBS libraries of the trios samples either of HAPMAP CEU or Yoruba. However the whole genome sequencing and RNA sequencing data are available for some samples but not all sample in the trios listed in the GMI grant proposal.
- The links I used to check the whole genome and RNA sequencing data availabilities:
Below table are HAPMAP samples I have processed by capturing with BSPP
Catalog ID | Sex | Family | Relationship | Whole genome sequnces | RNA Seq |
GM10860 | Male | 1362 | father | no | no |
GM11992 | Male | 1362 | paternal grandfather | yes | yes |
GM11993 | Female | 1362 | paternal grandmother | yes | yes |
GM10861 | Female | 1362 | mother | no | no |
GM11994 | Male | 1362 | maternal grandfather | yes | yes |
GM11995 | Female | 1362 | maternal grandmother | yes | yes |
GM12801 | Male | 1454 | father | no | no |
GM12812 | Male | 1454 | paternal grandfather | yes | yes |
GM12813 | Female | 1454 | paternal grandmother | yes | yes |
GM12802 | Female | 1454 | mother | no | no |
GM12814 | Male | 1454 | maternal grandfather | yes | yes |
GM12815 | Female | 1454 | maternal grandmother | yes | yes |