Daniel:Notebook/GenomeMiner/2013-9-26

From ZhangLabWiki
Revision as of 17:49, 26 September 2013 by >Djacobse (→‎More BWA Align)
Jump to navigation Jump to search

Mock HL155 (Started 9/9/2013)

Back to Calendar

More BWA Align

Checking a few more bwa alignments that might yield interesting results. In this case I'm checking the 1 per read error data.

Error Counting Results (1 Error per Read, Full Reference Sequence)

Error Rate: 1.35%
Error Rate of Insertions: 0.221%
Error Rate of Deletions: 0.041%
Error Rate of Substitutions: 1.09%
Alignment %: 99.77%

Error Counting Results (1 Error per Read, Short Reference Sequence)