Dinh/Dinh 2013/NOTES/2013-10-7

From ZhangLabWiki
Revision as of 22:50, 7 October 2013 by >Dinh (Created page with "= MEGAN analysis of unmapped reads= * I mapped the first 1000 unmappable reads with blastn $blastn -p blastn -d $dbfile -K 100 -E 100 -g F -F "m D" -a 16 -W 7 -i tmp.fa -o ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

MEGAN analysis of unmapped reads

  • I mapped the first 1000 unmappable reads with blastn
 $blastn -p blastn -d $dbfile -K 100 -E 100 -g F -F "m D" -a 16 -W 7 -i tmp.fa -o $f.bwa.R1.blast
  • Result from MEGAN:
 File:Indx12.bwa.R1.megan.png
 File:Indx13.bwa.R1.megan.png
 File:Indx14.bwa.R1.megan.png