Dinh/Dinh 2013/NOTES/2013-10-7

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Revision as of 22:54, 7 October 2013 by >Dinh
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MEGAN analysis of unmapped reads

  • I mapped the first 1000 unmappable reads with blastn
 $blastn -p blastn -d nt -K 100 -E 100 -g F -F "m D" -a 16 -W 7 -i Indx12.fa -o Indx12.bwa.R1.blast
  • Result from MEGAN (Indx12, Indx13, Indx14 only):
 File:Indx12.bwa.R1.megan.png
 File:Indx13.bwa.R1.megan.png
 File:Indx14.bwa.R1.megan.png