Daniel:Notebook/GenomeMiner/2013-10-9

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Revision as of 17:31, 9 October 2013 by >Djacobse (Created page with "=HL155 Novoalign (Started 10/3/2013)= Back to Calendar ==V4S3== ===Pipeline=== '''Build Index''' ...")
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HL155 Novoalign (Started 10/3/2013)

Back to Calendar

V4S3

Pipeline

Build Index

novoindex index_v4s2fullrevcomp.ndx V4S2_fullrevcomp.fa

Novoalign

novoalign -d index_v4s2fullrevcomp.ndx -f ../../s_3_1_Indx12.txt -F ILMFQ -r ALL -o SAM -o FULLNW > novo_v4s2.sam