Daniel:Notebook/HiResChrPaint/2014-6-18

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Revision as of 15:33, 18 June 2014 by >Djacobse (Created page with "=Probe Design (Started 06/17/2014)= Back to Calendar ==Probe Mining== #Run OligoArray2 with gr...")
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Probe Design (Started 06/17/2014)

Back to Calendar

Probe Mining

  1. Run OligoArray2 with greater memory allocation
    1. java -Xmx8192m -jar /home/djacobse/blastdb_hg38/OligoArray2_1/OligoArray2.jar -i in_caskgene.fas -d hg38.fas -o oligo_caskgene.txt -r rejected_oligo.fas -R caskgene.log -n 30 -l 60 -L 60 -D 1000 -t 55 -T 65 -s 70 -x 70 -p 35 -P 80 -m "CCCC;GGGG;TTTTT;AAAAA" -g 2