Daniel:Notebook/Haplotyping/SISSORPipeline

From ZhangLabWiki
Revision as of 20:20, 2 December 2014 by >Djacobse (→‎SISSOR Segmentation Pipeline)
Jump to navigation Jump to search

SISSOR Segmentation Pipeline

Back to Haplotyping Notebook

The purpose of this section is to include data from my recreation/use of Eric's algorithm to properly segment SISSOR data. Since SISSOR has very low coverage, the samtools targetcut function does not properly identify fragments created in the microfluidic device.

Eric's Original Algorithm

Calendar

<calendar> name=Daniel:Notebook/Haplotyping format=%name/%year-%month-%day date=2014/02/01 view=oneyear </calendar>