EricChu:LabNotesMDA/2015-2-25

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Revision as of 19:12, 25 February 2015 by >Ericchu
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~/data_Syn_15T/HL163/BWA$ /home/kunzhang/softwares/samtools-latest/samtools view -b -f 4 s_10_1_Indx49_sorted.bam > s_10_1_Indx49_sorted_unmapped.bam

~/data_Syn_15T/HL163/BWA$ /home/kunzhang/softwares/samtools-latest/samtools view -h s_10_1_Indx49_sorted_unmapped.bam > s_10_1_Indx49_sorted_unmapped.sam

~/data_Syn_15T/HL163/BWA$ awk '{print $10}' s_10_1_Indx49_sorted_unmapped.sam > s_10_1_Indx49_sorted_unmapped_blast.txt