Dinh:Thesis Overview
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Samples: Data analysis
- Salk's Human Tissues Whole Genome Bisulfite Sequencing '
- Paper: Not out yet
- Human peripheral mononuclear cells trio - type 2 diabetes - father, mother, daughter
- Human whole blood DNA methylation study - newborn, middle-age, centarian
Samples: Data generation
- Early definitive endoderm differentiation (Song's 3-days protocol)
- {| class="wikitable"
| align="center" style="background:#f0f0f0;"|Tube ID | align="center" style="background:#f0f0f0;"|Sample | align="center" style="background:#f0f0f0;"|Concentration (QUBIT, ng/ul) |- | MA-16||H1 p54 Control TeSR||57.0 |- | MA-17||H1 p54 Activin-A||40.1 |- | AP-13||H1 p47 Control TeSR||85.0 |- | AP-14||H1 p47 BMP-4||49.4 |- | ESCd0.1||Day 0 ESCs||40.3 |- | ESCd0.2||Day 0 ESCs||56.0 |- | ESCd0.3||Day 0 ESCs||86.0 |- | DE-d3.1||Day 3 definitive endoderm||34.0 |- | DE-d3.2||Day 3 definitive endoderm||37.7 |- | DE-d3.3||Day 3 definitive endoderm||25.7 |- | NaiveESC.1||naïve ESCs cells||26.3 |- | NaiveESC.2||naïve ESCs cells||30.0 |}
- 10 MDS patients, known genotypes, (w/ Tiffany from Dr. Bejar's Lab)
- K562 cell lines: TET2 knockout (2), DNMT3a knockout (2), wildtype (2), (w/ Tiffany from Dr. Bejar's Lab)