User contributions for KunZhang
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23 July 2015
- 22:3422:34, 23 July 2015 diff hist +106 m Kun:LabNotes/MONOD/2015-7-16 →First test
- 22:3122:31, 23 July 2015 diff hist 0 N File:150721 MiSeq small insert count top100 heatmap.pdf No edit summary current
- 22:3122:31, 23 July 2015 diff hist 0 N File:150721 MiSeq small insert count top100 heatmap.png No edit summary current
- 22:3122:31, 23 July 2015 diff hist +983 m Kun:LabNotes/MONOD/2015-7-16 No edit summary
- 19:2419:24, 23 July 2015 diff hist 0 N File:MONOD Jun2015 sequence.txt No edit summary current
- 19:2419:24, 23 July 2015 diff hist 0 N File:MONOD June2015 all targets probeInfo.txt No edit summary current
- 19:2219:22, 23 July 2015 diff hist +191 m Kun:LabNotes/MONOD/2015-7-16 →MONOD V6 (aka MONOD June2015)
- 19:0619:06, 23 July 2015 diff hist +3,097 N Kun:LabNotes/MONOD/2015-7-16 Created page with "==MONOD V6 (aka MONOD June2015)== *Target selection: 1. MONOD v1/v3 efficient targets 2. BluePrint efficient targets 3. Illumina/USC 1000 CRC targets 4. Hand c..."
- 19:0219:02, 23 July 2015 diff hist +124 m Kun:LabNotes/MONOD →Optimization thread
12 July 2015
- 06:3506:35, 12 July 2015 diff hist +531 m Kun:LabNotes/MONOD/2015-7-6 No edit summary
6 July 2015
- 23:2923:29, 6 July 2015 diff hist 0 N File:Tumor WGBS sampleInfo mappable bins.txt No edit summary current
- 23:2923:29, 6 July 2015 diff hist 0 N File:Whole blood WGBS sampleInfo mappable bins.txt No edit summary current
- 23:2723:27, 6 July 2015 diff hist 0 N File:N37 10 tissue pool WGBS sampleInfo mappable bins.txt No edit summary current
- 23:2623:26, 6 July 2015 diff hist +1,149 m Kun:LabNotes/MONOD/2015-7-6 →Data analysis: re-defining bins based on methylation haplotype blocks
- 23:0223:02, 6 July 2015 diff hist 0 N File:Ecker-Tissue WGBS sampleInfo mappable bins.txt No edit summary current
- 23:0123:01, 6 July 2015 diff hist 0 N File:H1ESC WGBS sampleInfo mappable bins.txt No edit summary current
- 23:0023:00, 6 July 2015 diff hist +2,009 N Kun:LabNotes/MONOD/2015-7-6 Created page with "==Data analysis: re-defining bins based on methylation haplotype blocks== *I have previously defined a set of methylation LD blocks based on the N37 and whole-blood WGBS data,..."
4 May 2015
- 03:3103:31, 4 May 2015 diff hist +48 m Athurva Gore:LabNotes/ExomePipeline →Changelog current
3 May 2015
- 05:1905:19, 3 May 2015 diff hist −2 m Athurva Gore:LabNotes/ExomePipeline →Generate data annotation file (.info file)
2 May 2015
- 04:1604:16, 2 May 2015 diff hist −47 m Athurva Gore:LabNotes/ExomePipeline →05/01/2015
- 04:0504:05, 2 May 2015 diff hist +82 m Athurva Gore:LabNotes/ExomePipeline No edit summary
26 April 2015
- 05:3005:30, 26 April 2015 diff hist +2 m Kun:LabNotes/SingleCellExpr/2015-4-25 →Extract mapped reads from Bam files for IGV inspection current
- 05:3005:30, 26 April 2015 diff hist +45 m Kun:LabNotes/SingleCellExpr/2015-4-25 →Extract mapped reads from Bam files for IGV inspection
- 05:3005:30, 26 April 2015 diff hist 0 N File:Extract bam for selected genes.txt No edit summary current
- 05:2805:28, 26 April 2015 diff hist +1,026 N Kun:LabNotes/SingleCellExpr/2015-4-25 Created page with "==Extract mapped reads from Bam files for IGV inspection== *I wrote a script for quick extraction of mapped sequencing reads near a list of genes from multiple data sets. This..."
- 05:1505:15, 26 April 2015 diff hist +109 m Kun:LabNotes/SingleCellExpr No edit summary
17 April 2015
- 17:1617:16, 17 April 2015 diff hist +1,615 m Kun:LabNotes/MONOD/2015-3-11 →Data analysis: defining bins based on methylation haplotype blocks
- 00:0700:07, 17 April 2015 diff hist −81 m MediaWiki:Sidebar No edit summary
7 April 2015
- 21:1321:13, 7 April 2015 diff hist +23 m Main Page No edit summary
- 00:0100:01, 7 April 2015 diff hist +756 m Kun:LabNotes/MONOD/2015-3-11 →Calculate MHL loads and construct matrices.
6 April 2015
- 01:3801:38, 6 April 2015 diff hist 0 m Kun:LabNotes/MONOD/2015-3-11 →Calculate mhl loads and construct matrices.
- 01:3701:37, 6 April 2015 diff hist +2 m Kun:LabNotes/MONOD/2015-3-11 →Calculate mhl loads and construct matrixes.
- 01:3501:35, 6 April 2015 diff hist +883 m Kun:LabNotes/MONOD/2015-3-11 →Calculate mhl loads and construct matrixes.
- 01:1501:15, 6 April 2015 diff hist 0 N File:Get methHapLoad matrix.txt No edit summary current
- 01:1201:12, 6 April 2015 diff hist +270 Kun:LabNotes/MONOD/2015-3-11 →Increase the stringency for definine informative bins.
23 March 2015
- 17:2417:24, 23 March 2015 diff hist +193 m Kun:LabNotes/MONOD/2015-3-11 →Increase the stringency for definine informative bins.
- 17:2117:21, 23 March 2015 diff hist 0 N File:Batch WGBS RRBS CapSeq mld block partitioning stringent.txt No edit summary current
- 17:2117:21, 23 March 2015 diff hist +1,789 m Kun:LabNotes/MONOD/2015-3-11 No edit summary
- 17:0917:09, 23 March 2015 diff hist 0 N File:SeqCap extract mld block hapInfo.txt No edit summary current
- 17:0817:08, 23 March 2015 diff hist +73 m Kun:LabNotes/MONOD/2015-3-11 →Extract haplotypes into hapInfo files based on the informative bins.
21 March 2015
- 00:0900:09, 21 March 2015 diff hist +1 m Kun:LabNotes/MONOD/2015-3-11 →Extract haplotypes into hapInfo files based on the informative bins.
- 00:0900:09, 21 March 2015 diff hist 0 N File:1407-combined extract mld block hapInfo.txt No edit summary current
- 00:0800:08, 21 March 2015 diff hist +79 m Kun:LabNotes/MONOD/2015-3-11 →Extract haplotypes into hapInfo files based on the informative bins.
20 March 2015
- 06:1006:10, 20 March 2015 diff hist 0 N File:N37 WGBS extract mld block hapInfo.txt No edit summary current
- 06:0906:09, 20 March 2015 diff hist +75 m Kun:LabNotes/MONOD/2015-3-11 →Extract haplotypes into hapInfo files based on the informative bins.
- 00:1600:16, 20 March 2015 diff hist +3 m Kun:LabNotes/MONOD/2015-3-11 No edit summary
- 00:1600:16, 20 March 2015 diff hist +306 m Kun:LabNotes/MONOD/2015-3-11 No edit summary
19 March 2015
- 23:4323:43, 19 March 2015 diff hist +776 m Kun:LabNotes/MONOD/2015-3-11 →Define informative bins for haplotype analysis
- 23:0923:09, 19 March 2015 diff hist +1,214 m Kun:LabNotes/MONOD/2015-3-11 →Define informative bins for haplotype analysis
- 23:0823:08, 19 March 2015 diff hist 0 N File:Batch WGBS RRBS CapSeq mld block partitioning.txt No edit summary current