Sample record

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2009

Jul-Dec

Month Date Probe Set Tube label Conc. x vol. Seq facility Lib. Const. Read length # filtered reads # mappable reads
Sept 26 HL010 Exome s1,CV-ips - Zhang Lab Alice 40bp 17,770,197 13,270,733
Sept 26 HL010 Exome s2,CV-ips - Zhang Lab Alice 40bp 17,143,085
Sept 26 HL010 Exome s3,CV-fibroblast - Zhang Lab Alice 40bp 14248797
Sept 26 HL010 Exome s4,CV-fibroblast - Zhang Lab Alice 40bp 13741749
Sept 26 HL010 Exome s5,DF6-9-9 - Zhang Lab Alice 40bp 14210912
Sept 26 HL010 Exome s6,foreskin - Zhang Lab Alice 40bp 14514230
Sept 26 HL010 Exome s7,PGP8 - Zhang Lab Billy 40bp 11980992
Sept 26 HL010 Exome s8,PGP9 - Zhang Lab Billy 40bp 13292848
Sept 23 AL003 Exome s1,DF6-9-9 - Zhang Lab Alice 40bp 16,395,953 13,954,426
Sept 23 AL003 Exome s2,foreskin - Zhang Lab Alice 40bp 17,323,121 14,344,756
Sept 23 AL003 Exome s3,PGP1-ips - Zhang Lab Alice 40bp 17,005,060
Sept 23 AL003 Exome s4,CV-ips - Zhang Lab Alice 40bp 17,848,289 13,344,177
Sept 23 AL003 Exome s5,CV-fibroblast - Zhang Lab Alice 40bp 18,152,672 15,372,979
Sept 23 AL003 Exome s6,NA12878-3 - Zhang Lab Alice 40bp 18,391,593 14,109,009
Sept 23 AL003 USC-Hsieh s7,DK4#2 - Zhang Lab Kyle 40bp 13,632,900 11,976,351
Sept 23 AL003 USC-HSieh s8,TK9 - Zhang Lab Kyle 40bp 16,272,821 15,168,255
Sept 18 AL002 Exome s1,DF6-9-9 - Zhang Lab Alice 40bp 16,173,475
Sept 18 AL002 Exome s2,foreskin - Zhang Lab Alice 40bp 10,863,012
Sept 18 AL002 Exome s3,CV-ips - Zhang Lab Alice 40bp 8,306,219
Sept 18 AL002 Exome s4,CV-fibroblast - Zhang Lab Alice 40bp 3,987,069
Sept 18 AL002 - s5,PhiX-2nd - Zhang Lab Alice 40bp -
Sept 18 AL002 USC-Hsieh s6,MH001 H2 xHeaIII - Zhang Lab Kyle 40bp 19,490,463 18,566,845
Sept 18 AL002 USC-Hsieh s7,MH010B xDpnI - Zhang Lab Kyle 40bp 19,160,830 18,435,611
Sept 18 AL002 USC-Hsieh s8,Tk4 #2 - Zhang Lab Kyle 40bp 16,343,257 15,039,726
Sept 11 AL001 Exome s1,DF6-9-9 - Zhang Lab Alice 40bp 5,115,027
Sept 11 AL001 Exome s2,foreskin - Zhang Lab Alice 40bp 1,480,281
Sept 11 AL001 - s3,PhiX-2nd(re-amplified) - Zhang Lab Alice 40bp 12,640,504
Sept 11 AL001 - s4,PhiX - Zhang Lab - 40bp 12,737,950
Sept 11 AL001 cpg s5,Na21660-cpg97k - Zhang Lab Jie 40bp -
Sept 11 AL001 cpg s6,DFips-cpg30k+97k - Zhang Lab Jie 40bp 12,230,825
Sept 11 AL001 USC-Hsieh s7,MH010B x DpnI - Zhang Lab Kyle 40bp -
Sept 11 AL001 USC-Hsieh s8,Pol II - Zhang Lab Kyle 40bp 7,545,937 4,581,330
Sept 07 HL007 Exome s1,PGP4 - Zhang Lab Billy 36bp 12,221,023 -
Sept 07 HL007 Exome s2,PGP4 - Zhang Lab Billy 36bp 12,462,164 -
Sept 07 HL007 Exome s3,PGP6 - Zhang Lab Billy 36bp 12,781,093 -
Sept 07 HL007 Exome s4,PGP6 - Zhang Lab Billy 36bp 13,207,084 -
Sept 07 HL007 Exome s5,PGP10 - Zhang Lab Billy 36bp 11,853,340 -
Sept 07 HL007 Exome s6,PGP10 - Zhang Lab Billy 36bp 12,091,086 -
Sept 07 HL007 Cpg97k s7,50192A - Zhang Lab Jie 36bp 17,131,060 -
Sept 07 HL007 Cpg97k s8,50192B - Zhang Lab Jie 36bp 16,378,655 -
August 29 HL009-3 Exome s1,DF6-9-9 60nM Zhang Lab Alice 40bp -
August 29 HL009-3 Exome s2,DF6-9-9 60nM Zhang Lab Alice 40bp -
August 29 HL009-3 Exome s3,foreskin 45nM Zhang Lab Alice 40bp -
August 29 HL009-3 Exome s4,foreskin 45nM Zhang Lab Alice 40bp -
August 29 HL009-3 Exome s5,PGP1-ips 38nM Zhang Lab Alice 40bp -
August 29 HL009-3 Exome s6,CV-ips 90nM Zhang Lab Alice 40bp -
August 29 HL009-3 Exome s7,CV-fibroblast 76nM Zhang Lab Alice 40bp -
August 29 HL009-3 Exome s8,PGP1 34nM Zhang Lab Alice 40bp -
August 26 HL008 Exome s1,PGP4 - Zhang Lab Billy 40bp 14295243 -
August 26 HL008 Exome s2,PGP6 - Zhang Lab Billy 40bp 15558898 -
August 26 HL008 Exome s3,PGP10 - Zhang Lab Billy 40bp 15871619 -
August 26 HL008 Cpg97k s4,50192A - Zhang Lab Jie 40bp 10401608 -
August 26 HL008 Cpg97k s5,50192B - Zhang Lab Jie 40bp 9693893 -
August 26 HL008 Exome s6,Foreskin - Zhang Lab Alice 40bp 14739764 -
August 26 HL008 Exome s7,PGP4(MmeI) - Zhang Lab Billy 40bp 12106286 -
August 26 HL008 Control s8,PhiX - Zhang Lab Illumina 40bp 10161944 -
August 16 HL006 Exome s1,DF6-9-9 - Zhang Lab Alice 40bp 5,684,406 -
August 16 HL006 Exome s2,Foreskin - Zhang Lab Alice 40bp 8,009,671 -
August 16 HL006 Exome s3,Foreskin-lig - Zhang Lab Alice 40bp 8,369,819 -
August 16 HL006 Exome s4,NA12878 - Zhang Lab Alice 40bp 7,487,512 -
August 16 HL006 Exome s5,NA12878-lig - Zhang Lab Alice 40bp 8,411,077 -
August 16 HL006 Exome s6,NA12878 - Zhang Lab Billy 40bp 8,556,271 -
August 16 HL006 Exome s7,PGP10 - Zhang Lab Billy 40bp 9,736,297 -
August 16 HL006 Control s8,PhiX - Zhang Lab Illumina 40bp 6,985,337 -
August 13 HL005 Exome NA12878 - Zhang lab Billy 40bp 15,666,228
August 13 HL005 Exome NA12878 - Zhang lab Billy 40bp 14,091,504
August 13 HL005 Cpg97k Par1 - Zhang lab Jie Deng 40bp 10,385,536 3,005,889
August 13 HL005 Cpg97k Par9 - Zhang lab Jie Deng 40bp 7,537,771 3,430,524
August 13 HL005 USC-Hsieh MH010B xMboI - Zhang lab Kyle 40bp 6,699,431 6,125,263
August 13 HL005 USC-Hsieh MH010B xDpnI - Zhang lab Kyle 40bp 2,204,512 2,094,844
August 13 HL005 Exome(end-sequencing) PGP2S-Phu 54.5nM Zhang lab Alice Li 40bp 7,022,465 5,950,793
August 13 HL005 Exome(end-sequencing) PGP2S-iProof 60.6nM Zhang lab Alice Li 40bp 5,798,969 4,756,952
August 09 HL004 Exome s1,DF6-9-9-lig - Zhang Lab Alice 40bp 17,147,112 -
August 09 HL004 Exome s2,DF6-9-9-lig - Zhang Lab Alice 40bp 16,956,048 -
August 09 HL004 Exome s3,Foreskin-lig - Zhang Lab Alice 40bp 16,802,403 -
August 09 HL004 Exome s4,PGP10 - Zhang Lab Billy 40bp 18,644,730 -
August 09 HL004 Exome s5,PGP4 - Zhang Lab Billy 40bp 18,809,762 -
August 09 HL004 Exome s6,PGP4 - Zhang Lab Billy 40bp 18,970,955 -
August 09 HL004 Exome s7,PGP6 - Zhang Lab Billy 40bp 18,723,412 -
August 09 HL004 Exome s8,PGP6 - Zhang Lab Billy 40bp 19,233,480 -
August 05 HL003 Exome s1,DF6-9-9 - Zhang Lab Alice 40bp 4,417,586 2,288,789
August 05 HL003 Exome s2,Foreskin - Zhang Lab Alice 40bp 5,020,353 3,214,546
August 05 HL003 Exome s3,Foreskin-lig - Zhang Lab Alice 40bp 6,660,328 3,119,331
August 05 HL003 Exome s4,NA12878 - Zhang Lab Alice 40bp 3,727,520 1,981,326
August 05 HL003 Exome s5,NA12878-lig - Zhang Lab Alice 40bp 6,455,281 3,253,093
August 05 HL003 Exome s6,NA12878 - Zhang Lab Billy 40bp 14,992,076 8,643,897
August 05 HL003 Exome s7,PGP10 - Zhang Lab Billy 40bp 19,423,381 11,040,240
August 05 HL003 Control s8,PhiX - Zhang Lab Illumina 40bp 20,078,536 19,817,515
July 28 HL002 Exome s1,PhiX - Zhang Lab Illumina 40bp 19474917 -
July 28 HL002 Exome s2,Hues 6 ES-Dscp - Zhang Lab Kun 40bp 9991852 -
July 28 HL002 Exome s3,Hues 6 ES-trp - Zhang Lab Kun 40bp 8386791 -
July 28 HL002 Exome s4,NA12878 - Zhang Lab Alice 40bp 15015962 -
July 28 HL002 Exome s5,NA12878 - Zhang Lab Alice 40bp 15092576 -
July 28 HL002 Exome s6,NA12878 - Zhang Lab Alice 40bp 15223607 -
July 28 HL002 Exome s7,PGP10 - Zhang Lab Alice 40bp 15059266 -
July 28 HL002 RNA s8,CES8k-Hybrid1-ES - Zhang Lab Kun 40bp 8178891 -

Jan-Jun

Month Date Probe Set Tube label Conc. x vol. Seq facility Lib. Const. Read length # filtered reads # mappable reads
Feb 6 CpG30k_paired end BJ 75.4nM x 15ul; BioGem Jie 36bp x 2 7,662,828 2,535,784
Feb 6 CpG30k_paired end Hybrid_1 87.6nM x 15ul; BioGem Jie 36bp x 2 6,829,142 1,946,531
Feb 6 CpG30k_paired end PGP1_F 106nM x 15ul; BioGem Jie 36bp x 2 8,441,376 2,854,604
Feb 6 CpG30k_paired end HUES12 74.9nM x 15ul; BioGem Jie 36bp x 2 7,404,514 1,424,697
Feb 6 CpG30k_paired end PGP1_iPS1 90.3nM x 15ul; BioGem Jie 36bp x 2 5,617,832 1,899,427
Feb 6 CpG30k_paired end PGP1_L 77.6nM x 15ul; BioGem Jie 36bp x 2 5,258,188 2,220,886
Feb 6 CpG30k_paired end PGP3_L 80.9nM x 15ul; BioGem Jie 36bp x 2 5,286,442 1,838,971
Feb 6 CpG30k_paired end PGP9_L 96.9nM x 15ul; BioGem Jie 36bp x 2 5,689,552 2,292,028
March 13 Exome PGP1-CTRL 48.5ng/ul; 30ul Billy Li (Harvard) Alice Li 40bp 9,707,995 7,655,774
March 13 Exome PGP1-shaked 46ng/ul; 30ul Billy Li (Harvard) Alice Li 40bp 9,424,752 7,561,445
May 25 Exome PGP1E0509A 77nM; 40ul BioGem Alice Li 76bp 7,471,741 1,086,264
May 25 Exome PGP2E0509A 64nM; 40ul BioGem Alice Li 76bp 5,014,823 2,595,521
May 25 Exome PGP3E0509A 49.5nM; 40ul BioGem Alice Li 76bp 5,358,442 3,213,790
May 25 Exome NA12878E0509A 60nM; 40ul BioGem Alice Li 76bp 7,360,495 2,673,495
May 25 Exome PGP1E0509k 19nM; 40ul BioGem Kun Zhang 76bp 3,520,981 2,350,708
May 25 Exome PGP2E0509k 20nM; 40ul BioGem Kun Zhang 76bp 5,095,881 2,568,349
May 25 Exome PGP3E0509k 19nM; 40ul BioGem Kun Zhang 76bp 3,734,068 1,989,542
May 25 Exome NA12878E0509k 33nM; 40ul BioGem Kun Zhang 76bp 3,900,764 778,134
May 26 cpg97K_end sequencing NA21070*1 100406 captured targets 25.3ng/ul (96nM) x 15ul; Yuan Gao Jie/Kun 40bp 2,535,463
May 26 cpg97K_end sequencing NA21070*1 100406 normalized captured targets 23.1ng/ul (87nM) x 15ul; Yuan Gao Jie/Kun 40bp 2,377,687
May 29 Exome(end sequencing) PGP2_052909A 111nM; 15ul Yuan Gao Alice Li 40bp 6,390,979
May 29 Exome(end sequencing) PGP3_052909A 126nM; 15ul Yuan Gao Alice Li 40bp 6,110,991
June 4 Exome PGP5-1-060809 62.5nM; 10ul BioGem Alice Li 36bp 14,404,283 10,812,047
June 4 Exome PGP5-2-060809 65.7nM; 10ul BioGem Alice Li 36bp 14,994,770 11,253,456
June 4 Exome PGP7-1-060809 75.5nM; 10ul BioGem Alice Li 36bp 13,384,832 9,712,648
June 4 Exome PGP7-2-060809 79.7nM; 20ul BioGem Alice Li 36bp 14,204,382/13,509,137 10,519,374/9,961,481
June 8 cpg97k DF6-9-9_P16(4) 11nM x 10ul x 2 lanes; BioGem Jie 36bp 4,688,926
June 8 cpg97k foreskin 15nM x 10ul x 1 lane. BioGem Jie 36bp 3,320,865 1,825,557
June 10 Exome PGP1-3-061009 34nM; 15ul Bing Ren Alice Li 76bp 5,802,565
June 10 Exome PGP2-3-061009 25nM; 15ul Bing Ren Alice Li 76bp 3,193,644
June 10 Exome PGP3-3-061009 22nM; 15ul Bing Ren Alice Li 76bp 2,465,788
June 10 Exome NA12878-3-061009 22nM; 15ul Bing Ren Alice Li 76bp 1,285,265
June 10 cpg97k NA21070*1_100406_97k 21.2nM x 14ul; Bing Ren Jie 76bp 2,682,703 424,191
June 10 cpg30k DF6-9-9_P16(4)_30k 21.2nM x 14ul; Bing Ren Jie 76bp 918,811 151,519
June 10 cpg30k foreskin_30k 21.2nM x 14ul; Bing Ren Jie 76bp 424,770 65,177
June 18 Exome PGP5-1-060809 62.5nM; 5ul Bing Ren Alice Li 41bp 4,122,460
June 18 Exome PGP5-2-060809 65.7nM; 5ul Bing Ren Alice Li 41bp 3,907,906
June 18 Exome PGP7-1-060809 75.5nM; 5ul Bing Ren Alice Li 41bp 1,419,496
June 18 CES27k9bp_end sequening Hybrid_1_CES27k9bp 4.3ng/ul (37nM) x 5ul Bing Ren Jie 41bp 7,484,832
June 18 CES27k9bp_end sequening BJ_CES27k9bp 7.2ng/ul (62nM) x 5ul Bing Ren Jie 41bp 5,643,984
June 18 cpg97k DF6-9-9_P16(4)_97k_repeat 11nM x 5ul Bing Ren Jie 41bp 4,761,133
June 18 cpg97k foreskin_97k_repeat 7.5nM x 5ul Bing Ren Jie 41bp 6,683,303