Ylaine/2009-7-15

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Revision as of 17:47, 15 July 2009 by >Ylaine (New page: ==Comparing Maq/Maq and Bwa/Sam== Outputs from the two aligning/consensus calling methods often have different read numbers associated with SNPs at the same location, suggesting that the ...)
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Comparing Maq/Maq and Bwa/Sam

Outputs from the two aligning/consensus calling methods often have different read numbers associated with SNPs at the same location, suggesting that the mapping algorithms produce different results. This is confirmed by direct examination of the output 'pileup' files.